Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7675 140 3e-28 seq6894 100 2e-16 >seq7675 Length=222078 Score = 140 bits (154), Expect = 3e-28 Identities = 382/577 (66%), Gaps = 25/577 (4%) Strand=Plus/Plus Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 || || |||||||| || |||||||| || || | |||||||||||| | |||||| Sbjct 43101 GAAGGAGATTTGGGGCCAGTGTATGGCTTCCAGTAGAGACATTTTGGGTCAGAATATAAA 43160 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334 || ||||||||| |||||| | ||| || |||||||| ||||||| | ||| | | Sbjct 43161 GAAATGAACACAGATTATTCCAGGCAAAGAATAGATCAACTACAAAAATTAATTGACACA 43220 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAA------ 20388 || ||||| ||||| | || ||||| || | | || || | ||| ||||| Sbjct 43221 ATCAAAACCAACCCTGATGAAAGAAGGATCA---TGTGTGCTTAGAATTCTAAATCCTAA 43277 Query 20389 ---GATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCT 20445 || | ||| | ||||| | |||| ||||| | || || | || | ||| | Sbjct 43278 AGGAATCTTCCTCTGATGGCACTTCCTCTGTGTCACACTCTCTGTTAGTT---CTTTG-T 43333 Query 20446 AAT-AATG---AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGT 20501 | | |||| | | || ||| | | |||||| |||| | ||| ||| || | | Sbjct 43334 ATTAAATGGCAAGCTCTCTTGTTAGTTATATCAAAGATCTGGAGATGAGGGTCTCAGGAT 43393 Query 20502 TCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTT 20561 | ||||| ||||| |||||| | ||||| || || ||||| || || || | || | Sbjct 43394 GCTGTTCAACATTGCCAGTTATTCCCTGCTCACCTACATGATGGCCCAAGTCAAAGGCCT 43453 Query 20562 AAAAACGGGTGACTTAGTCCA-CACCATAGGAGACGCGCATATTTACCTTAATCATATAG 20620 ||| | ||||| || || || | | ||||| | ||||| ||||| |||| ||| Sbjct 43454 AAAGCCAGGTGAATTTGTACATAATTCTGGGAGATACTCATATATACCTGAATCGTAT-T 43512 Query 20621 AACCT--TTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTAC 20678 || || | |||||| ||||| | | |||||| || ||||| | || ||| Sbjct 43513 AAGCTACTGAAAATT-CAGTTTCAGCAAGAACCAAGACCTTTCCCTAAGCTCAAAATTCT 43571 Query 20679 TCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAA 20738 | ||| ||| || |||| | ||||| || || || || || | | |||| || || Sbjct 43572 TTGAAAAGTTGAAACTATTGATGATTTCAAGGCCGAGGACTTCCTTATTGAAGACTACAA 43631 Query 20739 TCCCCATAATTCAATTCCAATGGAAATGTCTGTTTAA 20775 ||| ||| | ||| |||||| ||| |||| ||| Sbjct 43632 TCCTCATCCAGCTATTAAAATGGAGATGGCTGTCTAA 43668 >seq6894 Length=939852 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| |||||||||||||| || || || || || | || Sbjct 59262 AGATCTTCCTCTGATGGCATTGCCTCCATGTCACGCTCTCTGTCAGTTCTATATACTGAA 59321 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || | || ||||| | ||||||||||| | |||||||| || || || || || Sbjct 59322 TGGCGAGCTCTCTTGTCAGTTATATCAACGATCTGGAGATATGGGCCTCGGGGTGCCGTT 59381 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| ||||| |||||| | ||||| || || |||||||| ||||| |||| Sbjct 59382 CAACATTGCCAGTTATTCCCTGCTCACCTACATGATTGCTCATGTCACAG 59431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399008984511430