Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7240 120 2e-22 seq22615 95.1 1e-14 >seq7240 Length=45712 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | ||||||||||| ||| || ||||| ||||||||||| | Sbjct 6230 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 6171 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| || | || ||||| || |||||||| || ||||| | ||| ||||| || | Sbjct 6170 AAGGTTCGCC--CATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGG 6113 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | || ||||||||| |||||| ||| || | | | | |||| | ||||| Sbjct 6112 GAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 6053 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || | ||| || |||||||| |||| |||||||||||||| ||||| Sbjct 6052 CTTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6004 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | ||||||||||| || |||||||| ||||||||||| | Sbjct 6458 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 6399 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || ||||| || ||||| || || || || | ||| || || || || Sbjct 6398 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGG 6339 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || ||| || ||| ||| || | | | | |||| | ||| || Sbjct 6338 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 6279 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| |||| |||||||| || || ||||| Sbjct 6278 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||||||| || ||| || ||||| ||||||||||| | Sbjct 7302 CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 7243 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || ||||| || ||||| || || ||||| | ||| ||||| || || Sbjct 7242 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 7183 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || ||||| |||||| ||| || | | | | |||| | |||||| Sbjct 7182 ATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 7123 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || || || || |||| || ||||||||||| ||||| Sbjct 7122 TCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 >seq22615 Length=203576 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | ||||||||||| ||| |||||||| ||||||||||| | Sbjct 193096 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 193037 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || ||||| || ||||| || || ||||| | ||| || || || || Sbjct 193036 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 192977 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || || ||| || ||| ||| || | | | | |||| | |||||| Sbjct 192976 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 192917 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || || || || |||| |||||||||||||| ||||| Sbjct 192916 TCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394901985945454