Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq571 120 3e-22 seq27249 98.7 1e-15 seq30385 82.4 7e-11 >seq571 Length=175726 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||||||||| ||||| || ||||| |||||||| ||||| || |||||||| | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| ||||| || ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 168944 CTACAACACGTTCACC 168929 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | || ||||| | ||||| || ||||||||||||||||| ||| Sbjct 172702 GACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCT 172643 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAA 14004 |||| ||| ||||| ||||||||||||||||||||| || | |||| Sbjct 172642 TCCAATGAGATATTCTCCATAAAATCAAATGGATTTTCTGCCCTAAA 172596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/105 (81%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 14454 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| ||||| ||| ||| ||| || || |||||||||| |||||||||||||| || Sbjct 166166 CCTT-TCTTTGGAGTCCTT--AATATAAGTGTCAATAAGTAGACTATACATTTCAGAATG 166110 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 ||||||||||||||| || || || ||||| ||||| | ||||| Sbjct 166109 TATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCTTC 166065 >seq27249 Length=297398 Score = 98.7 bits (108), Expect = 1e-15 Identities = 260/389 (67%), Gaps = 26/389 (7%) Strand=Plus/Minus Query 14252 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 14311 ||||| | |||||| |||| || || || || |||| ||||||| || || || Sbjct 100966 GAAAAAGCTAATCCAAGCATTAAATCT---TTCTTGGACCAGAATATTGATGCAAAAGAA 100910 Query 14312 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14371 | ||||| ||| ||| ||||| || ||||| |||| || | ||| ||| | | |||| Sbjct 100909 TCAGAAAAAAAT--TCCTTCAACAGCTGCAAAGGCTAGTACACATTCACCATATGTTGCT 100852 Query 14372 TTTTTGTTCGATATCCATTTTCTAGCCCATTC-AGAtttttttttAATAAAATCCATTG- 14429 | ||||| | ||||| || || || || ||| ||||||| | | | || Sbjct 100851 TCTTTGTCCCCAATCCA-------GCACAGTCCAGCTTTCTTTTTAACATGAGGTAGTGG 100799 Query 14430 TTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAA 14489 ||||||| |||| || | | |||| | || || | | | ||| | || ||||||| Sbjct 100798 TTTCAATGCCATTGAAGAGAAATTCCATTTCCTTTGAGCCTTTAATATGAGTGTCAATAA 100739 Query 14490 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATC 14549 | | || || |||||||| ||| ||||||||||| || || || |||| || || | Sbjct 100738 GGAGACTGTATATTTCAGAATGT--GTTTTCCATAGTAATTTGGAAGACATAGAAGCAAC 100681 Query 14550 TAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGG--CCAAATTTTCATTAACTAT 14607 |||| || | |||| | | || | || ||| |||| ||| |||| || Sbjct 100680 AGGCTTATGTTC--TGTATTTGTTGGTTCA---TTGCGGTCCCAAGTTTGCATTTTCT-- 100628 Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATA 14636 ||||||| |||||||| || ||||||| Sbjct 100627 -CCATCACATGCTGCAAAGAAGGCCAATA 100600 >seq30385 Length=536680 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 13910 ATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13969 |||| ||||||| | |||| ||||||||||| |||||||||| ||||| || ||| Sbjct 270364 ATTTGCTGATATTATCCAACT-TTTTTTCAAAGCAGTTAGTTTTCTGTTCCAAAGAGATA 270422 Query 13970 TTTTCCATAAAATCAAATGGATTTGTTGACATAAACA--CTTTATCACAACCTAGTTCTA 14027 ||||| ||||| | |||||||||| | || | || | ||| | | |||||||||| | Sbjct 270423 TTTTCTATAAAGTAAAATGGATTT-TCTACTTTAAGAAGCTTGCT-AAAACCTAGTTCCA 270480 Query 14028 ATAGTAA-TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCT 14086 || |||| | || || | || ||||| || || ||||||| ||||||| | Sbjct 270481 AT-GTAAGTTGGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGAAATTCATTCTA 270539 Query 14087 ATTAGTTTTACAGG 14100 || | || ||||| Sbjct 270540 ATCAACTTCACAGG 270553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482128701242320