Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7240 125 5e-24 seq22615 114 1e-20 seq22597 107 1e-18 seq6982 98.7 8e-16 seq33301 87.8 1e-12 seq7502 84.2 2e-11 >seq7240 Length=45712 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || |||||||| || ||||||||||| | || ||| | ||| Sbjct 6216 AAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATC 6157 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || ||| |||| | ||| || || || ||| | ||||||||| || Sbjct 6156 TTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 6097 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| |||||| | ||| ||||||| |||||| ||||| ||||||| | Sbjct 6096 CTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGT 6037 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| ||||| || || ||||| || |||||| Sbjct 6036 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 6003 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || |||||||| || ||||||||||| | || || | |||| Sbjct 7287 AGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCT 7228 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| | ||| || || || ||| | |||||| || || Sbjct 7227 TCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 7168 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||||| |||||| ||||| ||||||| || Sbjct 7167 TGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTT 7108 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| ||||| ||||| || ||||| Sbjct 7107 TTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || ||||| || || ||||||||||| | || || || ||| Sbjct 6444 AAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 6385 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || ||| | || | ||| || ||||| ||| | |||||| ||||| Sbjct 6384 TTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATC 6325 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | ||| ||||||| |||||| ||||| ||||||| | Sbjct 6324 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGT 6265 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||| || || || ||||| ||||| Sbjct 6264 CTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22615 Length=203576 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || ||||| || || ||||||||||| | || || | ||| Sbjct 193082 AAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 193023 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || ||| |||| | ||| || ||||| ||| | |||||| ||||| Sbjct 193022 TTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATC 192963 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | ||| ||||||| |||||| ||||| ||||||| | Sbjct 192962 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGT 192903 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || ||||| || || ||||| || ||||| Sbjct 192902 TTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Score = 86.0 bits (94), Expect = 5e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | |||||| ||||||||||| || ||||||||||| | || || || ||| Sbjct 192854 AAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATC 192795 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || ||| | || | ||| || || || ||| | |||||| ||||| Sbjct 192794 TTCCAGCTGCTTTCCGGCAAAAATCAATCTCTGCTGGTCTGGGGGGATGCCTTCTTTATC 192735 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || | | |||||| | | ||| || |||| ||| || ||||| |||||| Sbjct 192734 CTGGATCTTTGCCTTGACATTTTCAATGGTATCACTGGGTTCTACTTCAAGGGTGAT 192678 >seq22597 Length=1249212 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || |||||||| || ||||||||||| | || || || |||| Sbjct 1182816 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 1182757 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| ||||||| || || || || || | |||||| || || Sbjct 1182756 TCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 1182697 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | ||| ||| |||| |||||| ||| | ||||||| | Sbjct 1182696 TGGATTT-TGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGGT 1182638 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 1182637 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || |||||||| || ||||||||||| | || || || |||| Sbjct 1181763 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 1181704 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | ||| || || || Sbjct 1181703 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCT 1181644 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | ||| ||| |||| |||||| ||| | ||||||| | Sbjct 1181643 TGGATTT-TGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGGT 1181585 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 1181584 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || |||||||| || ||||||||||| | || || || ||| Sbjct 1181535 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCT 1181476 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC- 18232 |||| || ||||| ||| |||| || || || || || || | ||| || || || Sbjct 1181475 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCT 1181416 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 | | |||| | ||||| | ||| ||| |||| |||||| || | ||||||| | Sbjct 1181415 TGGATTTTGGT-TTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGGT 1181357 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| ||||| ||||| || |||||| Sbjct 1181356 CTTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323 >seq6982 Length=3457922 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18125 AAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTT 18184 ||| || |||||||| || ||||||||||| | || || | |||||||| || || Sbjct 878029 AAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTT 878088 Query 18185 GCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTG 18244 || || | || | ||| || || || | ||| | |||||| ||||| ||||| Sbjct 878089 TCCAGC--ACATCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGC 878146 Query 18245 CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAA 18304 |||||| | ||| || |||| ||| || ||||| ||||||| |||| |||||||| Sbjct 878147 CTTGACATTCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAA 878206 Query 18305 TGTTTTTACAAAAATTTG 18322 ||||| ||||| || || Sbjct 878207 GGTTTTCACAAAGATCTG 878224 >seq33301 Length=39358 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGA-ATGTTGTAGTCGGCCATTGTTTTACAATC 18172 || |||| || || || |||| |||| | ||||||||| | | || | || | ||| Sbjct 1088 AGAACCAACTGCAGGGTAGATTTTTTTCCAGATGTTGTAGACAGACAGAGCTTGTCCATC 1147 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||| || || || ||| |||| | || || ||||||| || | |||||| || || Sbjct 1148 TTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCAGGGCAATGCCTTCTTTGTC 1207 Query 18233 GGCAATTTGTTGCTTGACCTGTGC--AACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 ||| | | | ||| ||| | || |||||||||||||| ||||| |||||| Sbjct 1208 CTGAATCTTTGCCCTGA--TGTTCTTAATGGTGTCACCGGGCTCCATTTCAGGTGTGATG 1265 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || ||||| || || | ||||| ||||| Sbjct 1266 CTCTTACCAGTCAAGGTCTTCA-TAAAATCTGCAT 1299 >seq7502 Length=209603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/210 (70%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || | |||||| || |||||||||| || || || || | Sbjct 174984 AGAACCAAGTACAGGGTGGGTTCTTTCTGGATGTTGTAGT----CAGGGTGCCACCATGT 174929 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC- 18232 ||||| || || | ||| |||| | ||| || | ||| || | |||||| || || Sbjct 174928 TCCAACTGCTTTCTAGCAAAGATTA-TCTCTGCTCATCTGGAGGAATGCCTTCTTTGTCT 174870 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| |||| | |||||| | ||| ||||||| |||||| | ||||| |||||| | Sbjct 174869 TGCATTTTGGT-CTTGACATTCTCAAGGGTGTCACTGGGCTCTGCTTCAAGAGTGATGGT 174811 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTG 18322 ||| || ||||| |||| ||||| || || Sbjct 174810 TTTACCAGTCAAAATTTTCACAAAGATCTG 174781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379177683024630