Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15323 104 2e-17 seq22597 98.7 9e-16 seq6963 86.0 6e-12 >seq15323 Length=1134477 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||||||||| ||||| ||||| | ||||||||| || || || Sbjct 892936 CACCTCATCTTTACTAGTGTACTCTACTATTTCTGTACACAAATTGCTACATTTGATGGT 892877 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 |||| || ||| |||||||| ||||| || || || || ||||||||||| || Sbjct 892876 CCCCAGGTTCTGCTGATTGCTTTTCCGATTACAGCTGTCTTTATATAGCATGTACGGGGT 892817 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 892816 CCCTGTCTCCGTCTGGGACTCAATGATGGC 892787 >seq22597 Length=1249212 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || |||||||| || || |||||| | || || || || Sbjct 1181324 ATGCAGATCTTTGTGAAAACCCTGACAGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 1181383 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | |||||| | ||| ||||| || ||| | || || |||||| Sbjct 1181384 GATACTATTGAGAATGTCAAAACCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181443 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| |||||||| | || || || || ||| Sbjct 1181444 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCTGACTACAAC 1181503 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || ||||||||||| || | || || || |||| Sbjct 1181504 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGGTA 1181552 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 1181552 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1181611 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | |||||| | ||| ||||| || ||| | || || |||||| Sbjct 1181612 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181671 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| | || || || || ||| Sbjct 1181672 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1181731 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| || ||||||||||| || | || || || |||| Sbjct 1181732 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGGTA 1181780 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 1182605 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAAGTGGAGCCCAGT 1182664 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | |||||| | ||| ||||| |||||| | || || |||||| Sbjct 1182665 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 1182724 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| | || || || || ||| Sbjct 1182725 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1182784 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| || ||||||||||| || Sbjct 1182785 ATCCAGAAAGAATCCACCCTTCATCTGGTCCT 1182816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||||||||||||| |||||| | || || || || Sbjct 1181780 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTGGAGGTGGAGCCCAGT 1181839 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | ||| ||||| || ||| | || || |||||| Sbjct 1181840 GACACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181899 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| | || || || || ||||| ||| |||||||| Sbjct 1181900 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGAC 1181935 >seq6963 Length=4024090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || ||||||||| | | | | | | ||| |||||||||| ||||| ||| | ||||| Sbjct 2893792 GAAGAACCACTTCTCAGAAAAAGTTCTCGTCGATTTGTCATATTTCCAATTCAGTATCCT 2893733 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||||||||||| ||||| ||| |||| | ||||| || ||||| | ||||| ||| Sbjct 2893732 GACATTTGGAAGATGTATAAACAGGCTCAGGCATCTTTCTGGACTGCTGAAGAGGTA 2893676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445565949994080