Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq571 84.2 4e-11 >seq571 Length=175726 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || ||||| || |||||||||||||||||| |||| | || |||||||| |||| Sbjct 168939 TTGTAGCTTTTGCAGCTGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCT 168998 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | ||| | ||||||| | || | || ||||| | ||| ||| | Sbjct 168999 GGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCTAATGAACTAATTAGTAGAG 169058 Query 102036 ACGA 102039 | || Sbjct 169059 ATGA 169062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989127884035170