Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq30399 152 6e-32 seq15323 118 1e-21 seq571 114 2e-20 seq6963 105 8e-18 seq27154 98.7 1e-15 >seq30399 Length=2248691 Score = 152 bits (168), Expect = 6e-32 Identities = 901/1415 (64%), Gaps = 92/1415 (7%) Strand=Plus/Plus Query 62024 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62083 ||| | ||| ||||| | || | ||| |||||| | | | || | | | || | | Sbjct 1676624 TTTAAGTTTTTCCTTCTTCAGAGAGAACTGAATGAGTTAGAA-GCTGATCTTGTCCTCAA 1676682 Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 ||| |||||||| | || ||| | ||| || || || || || || || | ||| Sbjct 1676683 ATAATACATTCCAGGATTCAGATTCTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTT 1676742 Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203 ||| | || || || || |||||||||| ||| ||||| ||||| ||||| || Sbjct 1676743 CCTTTAAGTGGGCTCAGCAATGTGGATATTCAAAGACTGACTCTGATCAATGAATATCCC 1676802 Query 62204 CCTGTCTGCAGCCATTTTTATGATC-GTCTTTTGTGCAATTTCCCAAATAGTTTTATA-A 62261 | | || || |||| | || | || || ||||| |||||| | | | | ||||| | Sbjct 1676803 CTTATCAGCCACCATACTG--GAACAGTTTTGTGTGCCATTTCCAACACAATCTTATACA 1676860 Query 62262 ACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTACCATA 62318 |||| || | |||||| |||| | || || |||||| || || || | | || Sbjct 1676861 ACTCA-TTCAGATCTTCAGGAATTTCAGTGATATACTGAATAGAGACATCACATGCAATT 1676919 Query 62319 ATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGC 62378 ||| || || ||||| |||||||||| | ||| || | | || || | || Sbjct 1676920 ATCTGGTTTTT-ATCTCTTCATTCCATAGGCCTTGCTCTGTCAGATCTTCCAGCAAGTG- 1676977 Query 62379 GGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62438 |||| ||||| ||| |||||| ||||||||||||| ||||| || Sbjct 1676978 -----AACT---------TCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAA 1677023 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 ||||| |||| |||||| || ||||| ||| | ||| | ||||| || || Sbjct 1677024 GGTTCTGTGGACTGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCA 1677077 Query 62499 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTC 62558 | || ||||| ||||| | || | | || || | || | ||| || ||||||| Sbjct 1677078 AACAGCAAACTGTTTCTGATGCCAT-TATTTTGCAATATTCGTG-AGAATTTTCCAATTC 1677135 Query 62559 CAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTT----ACTGGC 62614 || || || || ||| |||||| ||||| | || ||||| Sbjct 1677136 CACAGTTCTATAGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGA 1677195 Query 62615 GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTC 62674 | | ||| ||||||| |||||||| || | || | || | | ||| || |||| Sbjct 1677196 G----AGCCTTCATATGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTC 1677251 Query 62675 TAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCT 62734 | |||| ||||||||||||||||||||| |||||||| ||| || || || | Sbjct 1677252 CTAGTCACCACAATAAATGGTTTCAAAGATCTGTTTATTTAGCAATTGGGCCTCTGGAGT 1677311 Query 62735 ATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC-TAATCCTTGAACACCAATACCGA 62793 ||||| ||||| || | || ||||| || || || | || | || | | |||||| | Sbjct 1677312 GTCAAAAGGATACTTCATCAGGATAAA-GCATCAGCTTGATTC-TGCTCTCTAATACCAA 1677369 Query 62794 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT-GGAATAGGATAATAATTAATATCT 62852 | || ||| | ||||| || | || ||| || || | |||| | | || || Sbjct 1677370 TGGGGTGATGACATTTATTTGACAAACTTGCCTCTAGGGCTA-GTTAAT-AGTGATGTCA 1677427 Query 62853 ATAATTTTATTGAGATTTCTG-ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC 62911 ||||||||||| | | || || ||||| |||||| | || |||||| | || | Sbjct 1677428 ATAATTTTATTTA-AGTTGTGTACAATGACTTTGGTACCTTCAGCCAGTTTCTGGAAGCC 1677486 Query 62912 AAAT---CGC-CCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGG 62967 | || || ||| | || |||||||| ||| | | ||| | || ||||| || | Sbjct 1677487 ATATATATGCTCCAAC-ATGACAAACATAATCAGGACCAAAGAAGACAAGTTACAGACTG 1677545 Query 62968 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 63027 | ||||||| | ||| | |||||| || ||||| | ||| || | ||||| | Sbjct 1677546 CAACCTCATCTTTTCTAGTATACTCTATTATTTCTGTGCATAAATTGCTGCCTTTGATGG 1677605 Query 63028 -TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 63086 |||| | ||||| ||||| || || ||||| || || || | ||| | ||| Sbjct 1677606 CCTCCT-AGTTTTGCTGATTGCTTTTCCAATTACAGCTGTCTTTGTAGAAAATATAAGGA 1677664 Query 63087 GTACCAGTTTCAATCTGAGATTCTATAATCGC--TTTC-----CAGACGAC---TCGAGC 63136 | || || || |||| || || || || || ||| || | || | | || Sbjct 1677665 ATCCCTGTCTCTGTCTGGGACTCAATGATAGCATATTCAATGATAGCCCACCTATTGGGC 1677724 Query 63137 CTTTA-----TTATAGATTTGTATCTCCTTTCT-----CTTTCGTATAGAGTATACAATC 63186 |||| ||| ||| || |||| ||||| ||||| || || ||| Sbjct 1677725 TTTTACAACCTTACAGACATG-ATCTTTTTTCTCATAACTTTC--ATTGA------CATC 1677775 Query 63187 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACG 63246 || || | |||||||||||||| || | || || |||| |||||||||| | Sbjct 1677776 --TCAAATTTTTCTCCCCAAACATT---CAGACCAGATCACTCATTAGGACACATCAGGG 1677830 Query 63247 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 63305 | || || | || | || |||| || ||||||| || |||||||| | || | Sbjct 1677831 AGCAGTCCTGATTATTTTCCAAATGTTTGATGAAGAGATTTGGGATCCAAAG-GATAAAG 1677889 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 || | |||||| | | || || || ||||| | || || || | ||| ||||| | Sbjct 1677890 AAAATATCTCTGGCTTACTGCTCTTCCTTTCCAATGTTTTTCTTTAAATCAAGGAATTCA 1677949 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 | || || | |||| ||||||||||| || || Sbjct 1677950 AAGATGTCTAAGAGCCAGGGTTCCAAGTAGATAGC 1677984 Score = 129 bits (142), Expect = 7e-25 Identities = 235/342 (69%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 63945 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--TCCTCCATCA 64002 || || |||||||| | || | |||||| | ||||| ||||| |||||||||| Sbjct 1678611 ATTATTGGAGAATGCCTGACACTAGAAGGATTTATTTAGTT--ATAAAGGTCCTCCATCA 1678668 Query 64003 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTA 64062 | ||||| || | ||| |||| ||| || || | ||| | | |||||||| |||| Sbjct 1678669 CATCACTGAACACTTTCTTTGCTTCTTTATGCAAATTATAAACAATAATTCTGGCTGCTA 1678728 Query 64063 GAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGT 64122 |||||||||||| || | || || || || || | | |||| |||||| || | Sbjct 1678729 AAATGGCATAATCTGGGTCTTTGGTGGTCAGGGTTGCAGTTGTTTCAACTGCCAAGGTAT 1678788 Query 64123 CCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAA 64182 | ||||| | || || || ||| ||||| |||||| |||| ||||| |||| || Sbjct 1678789 CTAATTCCCCTGTGGTCACCCCACTATATTATCCTTGGATAAGTTTCATGATGATTTGAA 1678848 Query 64183 TAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTT 64242 | |||| | | ||| |||| | | |||| | | ||| || | ||| || || | Sbjct 1678849 CATGATCAACAAATTCCATGTTGAGTCTATAGTAGAGTTTCTGTATCCTAGAAGTAATAT 1678908 Query 64243 TATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGA 64284 | ||||||||||| | |||| || |||| || |||||||| Sbjct 1678909 TGTCAAACATGACCTCATCCTGGTGGCCATCTCATTTAATGA 1678950 >seq15323 Length=1134477 Score = 118 bits (130), Expect = 1e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| |||| ||||||||||| |||||||| ||||| || ||||| | Sbjct 902711 ACCTGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATG 902652 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| || ||||| |||||||| || ||||| ||||| || || | || ||| Sbjct 902651 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAA 902592 Query 62508 CTATTTCT 62515 || ||||| Sbjct 902591 CTGTTTCT 902584 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 || ||| ||||||| |||||||| || | || || || | | ||| || || || || Sbjct 895832 GACCCTTCATATGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAG 895773 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 ||||| |||||||||||||||||||||| ||||| | || || || || || ||| Sbjct 895772 GCACCATAATAAATGGTTTCAAAGATCTGTTTATTCAACAACTGGGCCTCTGGACTCTCA 895713 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||||| | | || ||||| || || |||| ||||| || || ||||| ||||| Sbjct 895712 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGGG 895653 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| | ||||| || Sbjct 895652 CGATGACGTTTATTTGA 895636 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| |||||||| |||||||| ||||||||||| || | || ||||| || | || Sbjct 890657 CTCCACACGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCTCG 890598 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || || || || ||||| || | ||| ||||| | | || || | ||||| Sbjct 890597 CTGCTCTTCCTTCCCAGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAGTGCCA 890538 Query 63383 CGGTTCCAAGTATATGGC 63400 |||||||||||| ||||| Sbjct 890537 CGGTTCCAAGTAGATGGC 890520 >seq571 Length=175726 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||||| ||| |||||||| || | ||| ||||||| || || || | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| |||||||| || || || || ||||||||||||||||| || || ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 33724 C 33724 | Sbjct 168944 C 168944 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| ||||||||| | |||||||| || || | || || || || |||||||||||| Sbjct 172702 GACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCT 172643 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||||||| ||||| ||||| |||||||| ||||| Sbjct 172642 TCCAATGAGATATTCTCCATAAAATCAAATGGATT 172608 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || |||| |||||| || || | |||||||||||||| ||||| |||||||| || || Sbjct 166153 TCCTTAATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 166094 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || || ||||| |||||| Sbjct 166093 ATTTGGAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTCT 166049 >seq6963 Length=4024090 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| | Sbjct 2874076 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 2874135 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 ||||||||||||| | ||| || || || || ||||| || |||||||| ||||| || | Sbjct 2874136 TAAGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 2874195 Query 33724 CAATAAGTCTCTCTCC 33739 | | | ||| ||||| Sbjct 2874196 CGACCACTCTTTCTCC 2874211 Score = 102 bits (112), Expect = 1e-16 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 33952 AAAATCGTTCTG-CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAAT 34010 |||||| ||| | ||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 2880214 AAAATCACTCTTACCAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAG 2880273 Query 34011 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 34070 | || || |||||||| || |||| | | ||||| ||||||| | | |||||| Sbjct 2880274 ATGTGAGAGATGAAATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTT 2880333 Query 34071 GATATATCCAC 34081 |||| ||| || Sbjct 2880334 GATAAATCAAC 2880344 >seq27154 Length=1407572 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 || || |||||||||| | ||||| |||||||||| ||||| |||||||||| ||| Sbjct 270427 GTGACGTTCTATGATGTATATGTCGTTCTACAAGCTTTTGTGTTGGCTACTGCAGTATTT 270486 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || || ||||| | |||||||||||||| ||| ||| | |||| Sbjct 270487 CTTGGTTTGACTCTATACACGTTACAAACCAAGAGAGATTTCAGCAAATTTGGAGCAGG 270545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629534386770720