Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq30399 150 2e-31 seq15323 134 2e-26 seq27154 125 9e-24 seq571 114 2e-20 seq6963 111 2e-19 >seq30399 Length=2248691 Score = 150 bits (166), Expect = 2e-31 Identities = 896/1410 (64%), Gaps = 82/1410 (6%) Strand=Plus/Plus Query 64817 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 64876 ||| | ||| ||||| | || | ||| |||||| | | | || | | | || | | Sbjct 1676624 TTTAAGTTTTTCCTTCTTCAGAGAGAACTGAATGAGTTAGAA-GCTGATCTTGTCCTCAA 1676682 Query 64877 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 64936 ||| |||||||| | || ||| | ||| || || || || || || || | ||| Sbjct 1676683 ATAATACATTCCAGGATTCAGATTCTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTT 1676742 Query 64937 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 64996 ||| | || || || || |||||||||| ||| ||||| ||||| ||||| || Sbjct 1676743 CCTTTAAGTGGGCTCAGCAATGTGGATATTCAAAGACTGACTCTGATCAATGAATATCCC 1676802 Query 64997 CCTGTCTGCAGCCATTTTTATGATC-GTCTTTTGTGGAATTTCCCAAATAGTTTTATA-A 65054 | | || || |||| | || | || || |||| |||||| | | | | ||||| | Sbjct 1676803 CTTATCAGCCACCATACTG--GAACAGTTTTGTGTGCCATTTCCAACACAATCTTATACA 1676860 Query 65055 ACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTGCCATA 65111 |||| || | |||||| |||| | || || |||||| || || || ||| || Sbjct 1676861 ACTCA-TTCAGATCTTCAGGAATTTCAGTGATATACTGAATAGAGACATCACATGCAATT 1676919 Query 65112 ATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGC 65171 ||| || || ||||| |||||||||| | ||| || | | || || | || Sbjct 1676920 ATCTGGTTTTT-ATCTCTTCATTCCATAGGCCTTGCTCTGTCAGATCTTCCAGCAAGTG- 1676977 Query 65172 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 65231 || |||||| ||| |||||| ||||||||||||| ||||| || Sbjct 1676978 --------------AACTTCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAA 1677023 Query 65232 GGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 65291 ||||| |||| |||||| || ||||| ||| | ||| | ||||| || || Sbjct 1677024 GGTTCTGTGGACTGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCA 1677077 Query 65292 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 65351 | || ||||| ||||| | || | | || || | || | ||| || ||||||| Sbjct 1677078 AACAGCAAACTGTTTCTGATGCCAT-TATTTTGCAATATTCGTG-AGAATTTTCCAATTC 1677135 Query 65352 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGC 65407 || || || || || ||| ||||| | || ||||| Sbjct 1677136 CACAGTTCTATAGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGA 1677195 Query 65408 GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTC 65467 | | ||| ||||||| || ||||| || | || | || | ||||| || |||| Sbjct 1677196 G----AGCCTTCATATGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTC 1677251 Query 65468 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 65527 | |||| ||||||||||||| ||||||| |||||||| ||| || || | | Sbjct 1677252 CTAGTCACCACAATAAATGGTTTCAAAGATCTGTTTATTTAGCAATTGGGCCTCTGGAGT 1677311 Query 65528 ATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC-TAATCCTTGAACACCAATACCGA 65586 ||||| ||||| || | || ||||| || || || | || | || | | |||||| | Sbjct 1677312 GTCAAAAGGATACTTCATCAGGATAAA-GCATCAGCTTGATTC-TGCTCTCTAATACCAA 1677369 Query 65587 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT-GGAATAGGATAATAATTAATATCT 65645 | || ||| | ||||| || | || ||| || || | |||| | | || || Sbjct 1677370 TGGGGTGATGACATTTATTTGACAAACTTGCCTCTAGGGCTA-GTTAAT-AGTGATGTCA 1677427 Query 65646 ATAATTTTATTGAGATTTCTG-ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC 65704 ||||||||||| | | || || ||||| |||||| | || |||||| | || | Sbjct 1677428 ATAATTTTATTTA-AGTTGTGTACAATGACTTTGGTACCTTCAGCCAGTTTCTGGAAGCC 1677486 Query 65705 AAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGC 65761 | || |||| || |||||||| ||| | | ||| | || ||||| || || Sbjct 1677487 ATATATATGCTCCAACATGACAAACATAATCAGGACCAAAGAAGACAAGTTACAGACTGC 1677546 Query 65762 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG- 65820 ||||||| | ||| | |||||| || ||||| | ||| || | ||||||| Sbjct 1677547 AACCTCATCTTTTCTAGTATACTCTATTATTTCTGTGCATAAATTGCTGCCTTTGATGGC 1677606 Query 65821 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 65880 |||| | ||||| ||||| || || ||||| || || || | ||| | ||| Sbjct 1677607 CTCCT-AGTTTTGCTGATTGCTTTTCCAATTACAGCTGTCTTTGTAGAAAATATAAGGAA 1677665 Query 65881 TACCAGTTTCAATCTGAGATTCTATAATCGC--TTTC-----CAGACGAC---TCGAGCC 65930 | || || || |||| || || || || || ||| || | || | | || Sbjct 1677666 TCCCTGTCTCTGTCTGGGACTCAATGATAGCATATTCAATGATAGCCCACCTATTGGGCT 1677725 Query 65931 TTTA-----TTATAGATTTGTATCTCTTTTCTC-TTTCGTATAGTGTATACAATCGTTCG 65984 |||| ||| ||| || |||| ||||||| | | | | || || ||| || Sbjct 1677726 TTTACAACCTTACAGACATG-ATCTTTTTTCTCATAACTTTCATTG---AC-ATC--TCA 1677778 Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 || | |||||||||||||| || |||| || |||| |||||||||| || || Sbjct 1677779 AATTTTTCTCCCCAAACATT---CAGACCAGATCACTCATTAGGACACATCAGGGAGCAG 1677835 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAA 66103 || | || | || |||| || ||||||| || |||||||| | || | || | Sbjct 1677836 TCCTGATTATTTTCCAAATGTTTGATGAAGAGATTTGGGATCCAAAG-GATAAAGAAAAT 1677894 Query 66104 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 66163 |||||||| | || || || ||||| | || || || | ||| ||||| | | || Sbjct 1677895 ATCTCTGGCTTACTGCTCTTCCTTTCCAATGTTTTTCTTTAAATCAAGGAATTCAAAGAT 1677954 Query 66164 ATCATAATGCCACGGTTCCAAGTATATGGC 66193 || | |||| ||||||||||| || || Sbjct 1677955 GTCTAAGAGCCAGGGTTCCAAGTAGATAGC 1677984 Score = 129 bits (142), Expect = 8e-25 Identities = 235/342 (69%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 66738 ATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA--TCCTCCATCA 66795 || || |||||||| | || | |||||| | ||||| ||||| |||||||||| Sbjct 1678611 ATTATTGGAGAATGCCTGACACTAGAAGGATTTATTTAGTT--ATAAAGGTCCTCCATCA 1678668 Query 66796 CTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTA 66855 | ||||| || | ||| |||| |||||| || | ||| | || ||||| || |||| Sbjct 1678669 CATCACTGAACACTTTCTTTGCTTCTTTATGCAAATTATAAACAATAATTCTGGCTGCTA 1678728 Query 66856 TAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGT 66915 |||||||||||| || | || || || || || | | |||| |||||| || | Sbjct 1678729 AAATGGCATAATCTGGGTCTTTGGTGGTCAGGGTTGCAGTTGTTTCAACTGCCAAGGTAT 1678788 Query 66916 CCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAA 66975 | ||||| | || || || ||| ||||| ||||||||||| ||||| |||| || Sbjct 1678789 CTAATTCCCCTGTGGTCACCCCACTATATTATCCTTGGATAAGTTTCATGATGATTTGAA 1678848 Query 66976 TAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTT 67035 | |||| | | || |||| | | ||| | | ||| || | ||| || || | Sbjct 1678849 CATGATCAACAAATTCCATGTTGAGTCTATAGTAGAGTTTCTGTATCCTAGAAGTAATAT 1678908 Query 67036 TATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGA 67077 | ||||||||||| | |||| || |||| || |||||||| Sbjct 1678909 TGTCAAACATGACCTCATCCTGGTGGCCATCTCATTTAATGA 1678950 >seq15323 Length=1134477 Score = 134 bits (148), Expect = 2e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | |||||||||||||||||| | ||| || || || || || || |||| || Sbjct 882221 CACTGAACACTTTTTTTGTTTCTTTGTGCAAATTAGAAACAGCAATCCTGGCTGCTAAAA 882162 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | |||||||| ||||||| || || | || || | | |||| || ||||| ||||| | Sbjct 882161 TAGCATAATCTGGATGTTTGGTGGTCAAGGTTGCAGATGTTTCAGCAGCCAGGGTGTCTA 882102 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 | || || || || |||||| | |||| |||||||||||| ||||| | ||||| Sbjct 882101 ACTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTTATTT 882048 Score = 123 bits (136), Expect = 3e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| |||| ||||||||||| |||||||| ||||| || ||||| | Sbjct 902711 ACCTGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATG 902652 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| || ||||| |||||||| || ||||| ||||| || || | || ||| Sbjct 902651 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAA 902592 Query 65301 CTATTTCT 65308 || ||||| Sbjct 902591 CTGTTTCT 902584 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 || ||| ||||||| || ||||| || | || || || | ||||| || || || || Sbjct 895832 GACCCTTCATATGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAG 895773 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 ||||| |||||||||||||| ||||||| ||||| | || || || | || ||| Sbjct 895772 GCACCATAATAAATGGTTTCAAAGATCTGTTTATTCAACAACTGGGCCTCTGGACTCTCA 895713 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||||| | | || ||||| || || |||| ||||| || || ||||| ||||| Sbjct 895712 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGGG 895653 Query 65592 CTATGTCTCTTATTAGA 65608 | ||| | ||||| || Sbjct 895652 CGATGACGTTTATTTGA 895636 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || ||| |||||||| |||||||| ||||||||||| || | || | ||| |||| || Sbjct 890657 CTCCACACGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCTCG 890598 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || || || || ||||| || | ||| ||||| | | || || | ||||| Sbjct 890597 CTGCTCTTCCTTCCCAGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAGTGCCA 890538 Query 66176 CGGTTCCAAGTATATGGC 66193 |||||||||||| ||||| Sbjct 890537 CGGTTCCAAGTAGATGGC 890520 >seq27154 Length=1407572 Score = 125 bits (138), Expect = 9e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| || ||||||| | | ||||| | || |||||||||||||||||||||| Sbjct 280948 TTTTTATTAAATGCTTCCAACAAACGCAACAGGTTCAGGAACAGATTGATGATATCCAAG 280889 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 || | ||||| | || || | ||| |||||||| || || ||||| || ||| || Sbjct 280888 TATAGGTTGATGGCAGCCAATATATACTCTTCAGGGGAAAGTTTATGCATCAGTTGATGA 280829 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 || ||||| || |||||||| ||||| | |||||| || | ||||| | || | ||| Sbjct 280828 GTATCATAAATGATGAATCCACAGAACAGAAGGGCTCCCATTGCAGAAAAGATTATTTCC 280769 Query 9411 ACTGTTTCA 9419 ||| |||| Sbjct 280768 ACTAATTCA 280760 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| | ||||| || ||| ||||| | ||||| Sbjct 270545 CCTGCTCCAAATTTGCTGAAATCTCTCTTGGTTTGTAACGTGTATAGAGTCAAACCAAGA 270486 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||| || || |||||||| | |||||||| ||||||||||| || || Sbjct 270485 AATACTGCAGTAGCCAACACAAAAGCTTGTAGAACGACATATACATCATAGAACGTCAC 270427 >seq571 Length=175726 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||||||||||| ||| || ||||| || | ||| ||||||| || || || | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| |||||||| ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 36300 C 36300 | Sbjct 168944 C 168944 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || |||| ||| || ||||| | |||||||||||||| ||||| |||||||| || || Sbjct 166153 TCCTTAATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 166094 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || || |||||||||||| Sbjct 166093 ATTTGGAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTCT 166049 >seq6963 Length=4024090 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| | Sbjct 2874076 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 2874135 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 ||||||||||||| | ||||| || || || |||||||| |||||||| || || || | Sbjct 2874136 TAAGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 2874195 Query 36300 CAATAAGTCTCTCTCC 36315 | | | ||| ||||| Sbjct 2874196 CGACCACTCTTTCTCC 2874211 Score = 93.3 bits (102), Expect = 6e-14 Identities = 100/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 36528 AAAATCGTTCTG-CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586 |||||| ||| | ||||||||||| |||||||| ||||||||||||||||| ||||| Sbjct 2880214 AAAATCACTCTTACCAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAG 2880273 Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 36646 | || || |||||||| || | || | | ||||| ||||||| | | |||||| Sbjct 2880274 ATGTGAGAGATGAAATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTT 2880333 Query 36647 GATATATCCAC 36657 |||| ||| || Sbjct 2880334 GATAAATCAAC 2880344 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| | ||||| || ||||||| |||| ||||||||| ||||| |||||| || Sbjct 2893677 ACCTCTTCAGCAGTCCAGAAAGATGCCTGAGCCTGTTTATACATCTTCCAAATGTCAGGA 2893736 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || ||||||||||| || ||||||| Sbjct 2893737 TACTGAATTGGAAATATGACAAATC 2893761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657876836146160