Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7240 109 5e-19 seq22597 95.1 1e-14 seq22615 89.7 5e-13 >seq7240 Length=45712 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || ||||||| || || ||||| || ||||| || || || || | | Sbjct 7293 AAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGC 7234 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| ||||| || |||||| |||||| | ||||| || || || ||||||||| Sbjct 7233 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCT 7174 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| |||| | || | | || | ||||| |||||||||| |||| ||| Sbjct 7173 TTGTC-TTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGT 7115 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || |||||||| ||||| || || || ||||| Sbjct 7114 GATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | ||||| || || || ||||| || || | Sbjct 6458 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 6399 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || |||||| | || | | |||||||| || || Sbjct 6398 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGG 6339 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| ||| || | | || | ||||| ||||||| || Sbjct 6338 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 6279 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||||||||| || || ||||| || ||||| Sbjct 6278 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22597 Length=1249212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | |||| || || ||||| || ||||| || || | Sbjct 1181550 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181491 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| ||||| || || ||| |||| || | ||||| || ||||| Sbjct 1181490 AGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181431 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| |||||| ||| | | || | || || ||||||||||| Sbjct 1181430 ATGCCCTCTTTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACC 1181371 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || |||| ||||| || || || ||||| Sbjct 1181370 TCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||||| || | |||| || || ||||| || ||||| || || Sbjct 1182832 GCCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 1182773 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||||| ||||| || || ||| |||| || | ||||| || ||||| Sbjct 1182772 CAGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGG 1182713 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| |||||| ||| | | || | || || |||||||||| Sbjct 1182712 GATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCAC 1182653 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||| |||| || || || || || |||||| Sbjct 1182652 TTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATA 1182604 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||| ||||| || || ||| |||| || | ||||| || ||||| ||||| ||||| Sbjct 1181935 GTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTT 1181876 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| ||| | | || | ||||| ||||||||||||| | ||| | Sbjct 1181875 GTCTTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGAT 1181816 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| |||| || || || || || |||||| Sbjct 1181815 GGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCATA 1181779 >seq22615 Length=203576 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || || || || || ||||| || || | Sbjct 193096 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 193037 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| ||||| || |||||| |||||| | |||||||| || || Sbjct 193036 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 192977 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| ||| || | | || | ||||| |||||||||| Sbjct 192976 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 192917 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || ||||| || || || || || ||||| Sbjct 192916 TCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495840932420800