Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq30399 181 2e-40 seq15323 143 4e-29 seq571 129 8e-25 seq6963 114 2e-20 >seq30399 Length=2248691 Score = 181 bits (200), Expect = 2e-40 Identities = 869/1350 (64%), Gaps = 81/1350 (6%) Strand=Plus/Plus Query 78756 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTT 78815 ||| |||||||| | || ||| | ||| || ||||| || || || || | ||| Sbjct 1676683 ATAATACATTCCAGGATTCAGATTCTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTT 1676742 Query 78816 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 78875 ||| | || || || || |||||||||| ||| ||||| ||||| ||||| || Sbjct 1676743 CCTTTAAGTGGGCTCAGCAATGTGGATATTCAAAGACTGACTCTGATCAATGAATATCCC 1676802 Query 78876 CCTGTCTGCAGCCATTTTTATGATC-GTCTTTTGTGGAATTTCCCAAATAGTTTTATA-A 78933 | | || || |||| | || | || || |||| |||||| | | | | ||||| | Sbjct 1676803 CTTATCAGCCACCATACTG--GAACAGTTTTGTGTGCCATTTCCAACACAATCTTATACA 1676860 Query 78934 ACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTGCCATA 78990 |||| || | |||||| |||| | || || |||||| || || || ||| || Sbjct 1676861 ACTCA-TTCAGATCTTCAGGAATTTCAGTGATATACTGAATAGAGACATCACATGCAATT 1676919 Query 78991 ATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGC 79050 ||| || || |||||||||||||||| | ||| || | | || || | || Sbjct 1676920 ATCTGGTTTTT-ATCTCTTCATTCCATAGGCCTTGCTCTGTCAGATCTTCCAGCAAGTG- 1676977 Query 79051 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAT 79110 || |||||| ||| |||||| ||||||||||||| ||||| || Sbjct 1676978 --------------AACTTCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAA 1677023 Query 79111 GGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCC 79170 ||||| || | |||||| || ||||| ||| | || ||||||| || || Sbjct 1677024 GGTTCTGTGGACTGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCA 1677077 Query 79171 ACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCC 79230 | || ||||| ||||| | || || || | ||| | ||| || ||||| | Sbjct 1677078 AACAGCAAACTGTTTCTGATGCC--ATTATTTTGCAATATTCGTGAGAATTTTCCAATTC 1677135 Query 79231 CAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTAT 79290 || || || || |||| ||| | ||||||||| ||||| | || | | | Sbjct 1677136 CACAGTTCTATAGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGA 1677195 Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 || ||| ||||||||||| || || | || || ||| || ||||| || |||| | Sbjct 1677196 GAGCCTTCATATGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTCCTAG 1677255 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 | || ||||||||||||| || |||| ||||| || ||| || ||| | | ||| Sbjct 1677256 TCACCACAATAAATGGTTTCAAAGATCTGTTTATTTAGCAATTGGGCCTCTGGAGTGTCA 1677315 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGC-TAATCCTTGAACACCAATACCGATAGG 79469 || ||||| || | || ||||| || || || | || | || | | |||||| || || Sbjct 1677316 AAAGGATACTTCATCAGGATAAA-GCATCAGCTTGATTC-TGCTCTCTAATACCAATGGG 1677373 Query 79470 TCTATGTCTCTTATT--AGAAATTTCAGCTTCT-GGAATAGGATAATAATTAATATCTAT 79526 ||| | ||||| | ||| || || ||| || || | |||| | | || || || Sbjct 1677374 GTGATGACATTTATTTGACAAACTT--GCCTCTAGGGCTA-GTTAAT-AGTGATGTCAAT 1677429 Query 79527 AATTTTATTGAGATTCCTGACTATTACTTTG--ACC-ACATCCTTTAGTTTGAGAAA--- 79580 ||||||||| | || || || |||||| ||| || || ||||| | || Sbjct 1677430 AATTTTATTTAAGTTGTGTACAATGACTTTGGTACCTTCAGCC---AGTTTCTGGAAGCC 1677486 Query 79581 AT-CAAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGG 79639 || | || |||| | || |||||||| ||| | | ||| | || ||||| || | Sbjct 1677487 ATATATATGCTCCAAC-ATGACAAACATAATCAGGACCAAAGAAGACAAGTTACAGACTG 1677545 Query 79640 CTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGG 79699 | ||||||| | ||| | ||||||||| ||||| | || || | || |||| Sbjct 1677546 CAACCTCATCTTTTCTAGTATACTCTATTATTTCTGTGCATAAATTGCTGCCTTTGATGG 1677605 Query 79700 -TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGA 79758 |||| | ||||| ||||| || || ||||| || || || | ||| | ||| Sbjct 1677606 CCTCCT-AGTTTTGCTGATTGCTTTTCCAATTACAGCTGTCTTTGTAGAAAATATAAGGA 1677664 Query 79759 GTACCAGTTTCAATCTGAGATTCTATAATCGC--TTTC-----CAGACGAC---TCGAGC 79808 | || || || |||| || || || || || ||| || | || | | || Sbjct 1677665 ATCCCTGTCTCTGTCTGGGACTCAATGATAGCATATTCAATGATAGCCCACCTATTGGGC 1677724 Query 79809 CTTTA-----TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCG 79863 |||| ||| |||| || |||| ||||||| | | | | | || || Sbjct 1677725 TTTTACAACCTTACAGACATG-ATCTTTTTTCTCATAACTTTCATTGACAT-----CTCA 1677778 Query 79864 AACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCAC 79923 || | ||||||||||||| || | |||| || || | ||||||||||| || || Sbjct 1677779 AATTTTTCTCCCCAAACAT--TC-AGACCAGATCACTCATTAGGACACATCAGGGAGCAG 1677835 Query 79924 TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAG 79982 || || || | | |||| || ||||||| || |||||||| | || | || | Sbjct 1677836 TCCTGATTATTTTCCAAATGTTTGATGAAGAGATTTGGGATCCAAAG-GATAAAGAAAAT 1677894 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 80042 |||||||| | ||||| || ||||| | || || || | ||| ||||| | | || Sbjct 1677895 ATCTCTGGCTTACTGCTCTTCCTTTCCAATGTTTTTCTTTAAATCAAGGAATTCAAAGAT 1677954 Query 80043 ATCAGAATGCCACGGTTCCAAGTATATGGC 80072 || | |||| ||||||||||| || || Sbjct 1677955 GTCTAAGAGCCAGGGTTCCAAGTAGATAGC 1677984 Score = 140 bits (154), Expect = 5e-28 Identities = 252/364 (69%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 80596 ACATCCATGGT-GATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATA 80654 ||||| | ||| ||| ||| || || |||||||| | || | |||||| | || Sbjct 1678590 ACATCTAGGGTTGATT-TTGCCATTATTGGAGAATGCCTGACACTAGAAGGATTTATTTA 1678648 Query 80655 GTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 80712 ||| ||||| ||||||||||| ||||| || | ||| |||| ||| || || | ||| Sbjct 1678649 GTT--ATAAAGGTCCTCCATCACATCACTGAACACTTTCTTTGCTTCTTTATGCAAATTA 1678706 Query 80713 GATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCT 80772 | || |||||||| |||||||||||||||||||| | || || || || || Sbjct 1678707 TAAACAATAATTCTGGCTGCTAAAATGGCATAATCTGGGTCTTTGGTGGTCAGGGTTGCA 1678766 Query 80773 GCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGG 80832 | | |||| |||||| || || ||||| | || || || ||| ||||| ||||||| Sbjct 1678767 GTTGTTTCAACTGCCAAGGTATCTAATTCCCCTGTGGTCACCCCACTATATTATCCTTGG 1678826 Query 80833 ATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAAT 80892 |||| ||||| |||| || | |||| | | || |||| | | ||| | | | Sbjct 1678827 ATAAGTTTCATGATGATTTGAACATGATCAACAAATTCCATGTTGAGTCTATAGTAGAGT 1678886 Query 80893 TTTCTAATACGAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTA 80952 || || | ||| || || || ||||||||||| | |||| || |||| || |||| Sbjct 1678887 TTCTGTATCCTAGAAGTAATATTGTCAAACATGACCTCATCCTGGTGGCCATCTCATTTA 1678946 Query 80953 ATGA 80956 |||| Sbjct 1678947 ATGA 1678950 >seq15323 Length=1134477 Score = 143 bits (158), Expect = 4e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | |||||||||||| ||||| | ||| || || || || ||||| ||||||| Sbjct 882221 CACTGAACACTTTTTTTGTTTCTTTGTGCAAATTAGAAACAGCAATCCTGGCTGCTAAAA 882162 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||||||||||| || || | || || | | |||| || ||||| ||||| | Sbjct 882161 TAGCATAATCTGGATGTTTGGTGGTCAAGGTTGCAGATGTTTCAGCAGCCAGGGTGTCTA 882102 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 80851 | || || || || |||||| | |||| |||||||||||| ||||| | ||||| Sbjct 882101 ACTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTTATTT 882048 Score = 118 bits (130), Expect = 2e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| |||| ||||||||||| |||||||| ||||| || ||||| | Sbjct 902711 ACCTGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATG 902652 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| || ||||| |||||||| || || |||||||| || || | || ||| Sbjct 902651 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAA 902592 Query 79180 CTATTTCT 79187 || ||||| Sbjct 902591 CTGTTTCT 902584 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 || |||||||| |||||||| ||||||||||| || | || ||||| |||| || ||| Sbjct 890653 ACACGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCTCGCTGC 890594 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || || || ||||| || | ||| ||||| | | || || | ||||||||| Sbjct 890593 TCTTCCTTCCCAGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAGTGCCACGGT 890534 Query 80059 TCCAAGTATATGGC 80072 |||||||| ||||| Sbjct 890533 TCCAAGTAGATGGC 890520 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||||||||| || || | || | ||| || ||||| || || || || || || ||| Sbjct 895823 TATGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAGGCACCATAA 895764 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| ||||| | || || ||| | || ||||| ||||| Sbjct 895763 TAAATGGTTTCAAAGATCTGTTTATTCAACAACTGGGCCTCTGGACTCTCAAAAGGATAT 895704 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || ||||| || || |||| ||||| || || ||||| ||||| | ||| | Sbjct 895703 CTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGGGCGATGACGT 895644 Query 79480 TTATTAGA 79487 ||||| || Sbjct 895643 TTATTTGA 895636 >seq571 Length=175726 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||||||||||||||| || ||||| || | ||| ||||||| || || || | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| |||||||| ||||| || |||||||||||||||||||| || || ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 50102 CAACAA 50107 | |||| Sbjct 168944 CTACAA 168939 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| ||||||||| | |||||||| || || | || || || || |||||||||||| Sbjct 172702 GACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCT 172643 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||||||| ||||| ||||| |||||||| ||||| Sbjct 172642 TCCAATGAGATATTCTCCATAAAATCAAATGGATT 172608 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || |||| |||||| || || | |||||||||||||| ||||| |||||||| || || Sbjct 166153 TCCTTAATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 166094 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || || ||||| |||||| Sbjct 166093 ATTTGGAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTCT 166049 >seq6963 Length=4024090 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| | Sbjct 2874076 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 2874135 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 ||||||||||||| | ||||| || || || ||||| || |||||||| || || || | Sbjct 2874136 TAAGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 2874195 Query 50102 CAACAAGTCTCTCTCC 50117 | || | ||| ||||| Sbjct 2874196 CGACCACTCTTTCTCC 2874211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 ||||||||||| |||||||| ||||||||||||||||| ||||| | || || ||| Sbjct 2880229 AAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGAAA 2880288 Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 50459 | ||| || | | | | ||||| ||||||| | | |||||| |||| ||| || Sbjct 2880289 TATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTTGATAAATCAAC 2880344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717945812477360