Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq571 123 2e-23 seq27249 107 2e-18 seq30385 86.0 6e-12 >seq571 Length=175726 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||||||||| ||||| || ||||| |||||||| ||||| || |||||||| | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| ||||| || ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 168944 CTACAACACGTTCACC 168929 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | || ||||| | ||||| || ||||||||||||||||| ||| Sbjct 172702 GACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCT 172643 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAA 13672 |||| ||| ||||| ||||||||||||||||||||| || | |||| Sbjct 172642 TCCAATGAGATATTCTCCATAAAATCAAATGGATTTTCTGCCCTAAA 172596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/105 (80%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 14122 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| ||||| ||| ||| ||| || || |||||||||| |||||||||||||| || Sbjct 166166 CCTT-TCTTTGGAGTCCTT--AATATAAGTGTCAATAAGTAGACTATACATTTCAGAATG 166110 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||||||||||||| || || || ||||| || || | ||||| Sbjct 166109 TATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCTTC 166065 >seq27249 Length=297398 Score = 107 bits (118), Expect = 2e-18 Identities = 262/389 (67%), Gaps = 26/389 (7%) Strand=Plus/Minus Query 13920 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC 13979 ||||| | |||||| |||| || || || || |||| ||||||| ||||| || Sbjct 100966 GAAAAAGCTAATCCAAGCATTAAATCT---TTCTTGGACCAGAATATTGATGCAAAAGAA 100910 Query 13980 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT 14039 | ||||| ||| ||| ||||| || ||||| |||| || | ||| ||| | | |||| Sbjct 100909 TCAGAAAAAAAT--TCCTTCAACAGCTGCAAAGGCTAGTACACATTCACCATATGTTGCT 100852 Query 14040 TTTTTGTTCGATATCCATTTTCTAGCCCATTC-AGAtttttttttAATAAAATCCATTG- 14097 | ||||| | ||||| || || || || ||| ||||||| | | | || Sbjct 100851 TCTTTGTCCCCAATCCA-------GCACAGTCCAGCTTTCTTTTTAACATGAGGTAGTGG 100799 Query 14098 TTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAA 14157 ||||||| |||| || | | ||||| | || || | | | ||| | || ||||||| Sbjct 100798 TTTCAATGCCATTGAAGAGAAATTCCATTTCCTTTGAGCCTTTAATATGAGTGTCAATAA 100739 Query 14158 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC 14217 | | || || |||||||| ||| ||||||||||| || || || |||| ||||| | Sbjct 100738 GGAGACTGTATATTTCAGAATGT--GTTTTCCATAGTAATTTGGAAGACATAGAAGCAAC 100681 Query 14218 TAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGG--CCAAATTTTCATTAACTAT 14275 |||| | | |||| || || | || ||| |||| ||| |||| || Sbjct 100680 AGGCTTATGTTC--TGTATTTGTTGGTTCA---TTGCGGTCCCAAGTTTGCATTTTCT-- 100628 Query 14276 ACCATCACTAGCTGCAAAAAATGCCAATA 14304 ||||||| |||||||| || ||||||| Sbjct 100627 -CCATCACATGCTGCAAAGAAGGCCAATA 100600 >seq30385 Length=536680 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/194 (72%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 13578 ATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13637 |||| ||||||| | |||| ||||||||||| |||||||||| ||||| || ||| Sbjct 270364 ATTTGCTGATATTATCCAACT-TTTTTTCAAAGCAGTTAGTTTTCTGTTCCAAAGAGATA 270422 Query 13638 TTTTCCATAAAATCAAATGGATTTATTGACATAAACA--CTTTATCACAACCTAGTTCTA 13695 ||||| ||||| | |||||||||| | || | || | ||| | | |||||||||| | Sbjct 270423 TTTTCTATAAAGTAAAATGGATTT-TCTACTTTAAGAAGCTTGCT-AAAACCTAGTTCCA 270480 Query 13696 ATAGTAA-TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13754 || |||| | || || | ||| ||||| || || ||||||| ||||||| | Sbjct 270481 AT-GTAAGTTGGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGAAATTCATTCTA 270539 Query 13755 ATTAGTTTTACAGG 13768 || | || ||||| Sbjct 270540 ATCAACTTCACAGG 270553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479512278311600