Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq571 120 3e-22 >seq571 Length=175726 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||||||||| ||||| || ||||| |||||||| ||||| || |||||||| | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| ||||| || ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 168944 CTACAACACGTTCACC 168929 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | || ||||| | ||||| || ||||| ||||||||||| ||| Sbjct 172702 GACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCT 172643 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAA 13460 |||| ||| ||||| ||||||||||| ||||||||| || | |||| Sbjct 172642 TCCAATGAGATATTCTCCATAAAATCAAATGGATTTTCTGCCCTAAA 172596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/105 (80%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 13910 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| ||||| ||| ||| ||| || || |||||||||| |||||||||||||| || Sbjct 166166 CCTT-TCTTTGGAGTCCTT--AATATAAGTGTCAATAAGTAGACTATACATTTCAGAATG 166110 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 ||||||||| ||||| || || || ||||| ||||| | ||||| Sbjct 166109 TATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCTTC 166065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478373590581360