Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15323 138 2e-27 seq30399 129 8e-25 seq571 120 4e-22 seq6963 114 2e-20 seq22439 87.8 2e-12 >seq15323 Length=1134477 Score = 138 bits (152), Expect = 2e-27 Identities = 135/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | |||||||||||| ||||| | ||| || || || || ||||| |||| || Sbjct 882221 CACTGAACACTTTTTTTGTTTCTTTGTGCAAATTAGAAACAGCAATCCTGGCTGCTAAAA 882162 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | |||||||||||||||| || || | || || | | |||| || ||||| ||||| | Sbjct 882161 TAGCATAATCTGGATGTTTGGTGGTCAAGGTTGCAGATGTTTCAGCAGCCAGGGTGTCTA 882102 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 | || || || || |||||| | |||| |||||||||||| ||||| | ||||| Sbjct 882101 ACTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTTATTT 882048 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| |||| ||||| ||||| |||||||| ||||| || ||||| | Sbjct 902711 ACCTGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATG 902652 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| || ||||| |||||||| || ||||| ||||| || || | || | | Sbjct 902651 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAA 902592 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | |||| Sbjct 902591 CTGTTTCTGATGCCAT 902576 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || |||||||| |||||||| ||||||||||| || | || ||||| |||| || ||| Sbjct 890653 ACACGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCTCGCTGC 890594 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || || ||||| || | ||| ||||| | | || || | ||||||||| Sbjct 890593 TCTTCCTTCCCAGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAGTGCCACGGT 890534 Query 72142 TCCAAGTATATGGC 72155 |||||||| ||||| Sbjct 890533 TCCAAGTAGATGGC 890520 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| ||||||| || ||||| || | | | ||| | ||||| || || || || Sbjct 895832 GACCCTTCATATGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAG 895773 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || ||||||||||||||||| || |||| ||||| | || || || || || ||| Sbjct 895772 GCACCATAATAAATGGTTTCAAAGATCTGTTTATTCAACAACTGGGCCTCTGGACTCTCA 895713 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || ||||| || || |||| ||||| || || ||||| ||||| Sbjct 895712 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGGG 895653 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 895652 CGATGACGTTTATTTGA 895636 >seq30399 Length=2248691 Score = 129 bits (142), Expect = 8e-25 Identities = 892/1411 (63%), Gaps = 84/1411 (6%) Strand=Plus/Plus Query 70779 TTTTATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAG 70838 ||| | ||||||||| | || | ||||||||| | || | || | | | || | | Sbjct 1676624 TTTAAGTTTTTCCTTCTTCAGAGAGAACTGAATGAGTTAGAA-GCTGATCTTGTCCTCAA 1676682 Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||| ||||| || | || ||| | ||| || || || || || || || | ||| Sbjct 1676683 ATAATACATTCCAGGATTCAGATTCTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTT 1676742 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 || | || || || ||||| ||||||| |||||||| ||||| ||||| || Sbjct 1676743 CCTTTAAGTGGGCTCAGCAATGTGGATATTCAAAGACTGACTCTGATCAATGAATATCCC 1676802 Query 70959 CCTGTCTGCAGCCATTTTTATGATC-GTCTTTTGTGGAATTTCCCAAATAGTTTTATA-A 71016 | | || || |||| | || | || || |||| |||||| | | | | ||||| | Sbjct 1676803 CTTATCAGCCACCATACTG--GAACAGTTTTGTGTGCCATTTCCAACACAATCTTATACA 1676860 Query 71017 ACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTGCAATA 71073 |||| || | |||||| |||| | || || |||||| || || || |||||| Sbjct 1676861 ACTCA-TTCAGATCTTCAGGAATTTCAGTGATATACTGAATAGAGACATCACATGCAATT 1676919 Query 71074 ATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGA 71133 ||| ||||| |||||||||||||||| | ||| || | | || || | | Sbjct 1676920 ATCTGGTTTTT-ATCTCTTCATTCCATAGGCCTTGCTCTGTCAGATCTTCCAGCA----A 1676974 Query 71134 GGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATAC 71193 | |||| |||||| ||| ||||| ||||||||||||| ||||| || Sbjct 1676975 G-----------TGAACTTCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAA 1677023 Query 71194 GGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 71253 ||||| |||| |||||| || ||||| ||| | ||| | ||||| || || Sbjct 1677024 GGTTCTGTGGACTGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCA 1677077 Query 71254 ACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTC 71313 | || | ||| ||||| | |||| | | | | | || | ||| || ||||||| Sbjct 1677078 AACAGCAAACTGTTTCTGATGCCATTATTTTGCAATAT-TCGTG-AGAATTTTCCAATTC 1677135 Query 71314 CAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTAT 71373 || || || || || || | || | | | Sbjct 1677136 CACAGTTCTATAGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGA 1677195 Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| ||||||| || ||||| || | | || ||| | ||||| || |||| | Sbjct 1677196 GAGCCTTCATATGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTCCTAG 1677255 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 | ||| ||||||||||||| || |||| ||||| || ||| || || || | ||| Sbjct 1677256 TCACCACAATAAATGGTTTCAAAGATCTGTTTATTTAGCAATTGGGCCTCTGGAGTGTCA 1677315 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGC-TAATCCTTGAACGCCAATACCGATAGG 71552 || ||||| || | || ||||| || || || | || | || | | |||||| || || Sbjct 1677316 AAAGGATACTTCATCAGGATAAA-GCATCAGCTTGATTC-TGCTCTCTAATACCAATGGG 1677373 Query 71553 TCTGTGTCTCTTATT--AGAAATTTCAGCTTCT-GGAATAGGATAATAATTAATATCTAT 71609 || | ||||| | ||| || || ||| || || | |||| | | || || || Sbjct 1677374 GTGATGACATTTATTTGACAAACTT--GCCTCTAGGGCTA-GTTAAT-AGTGATGTCAAT 1677429 Query 71610 AATTTTATTGAGATTTCTG-ACTATTACTTTG--ACC-ACATCCTTTAGTTTGAGAAAAT 71665 ||||||||| | | || || || || |||||| ||| || || ||||| | || Sbjct 1677430 AATTTTATTTA-AGTTGTGTACAATGACTTTGGTACCTTCAGCC---AGTTTCTGGAAGC 1677485 Query 71666 CAAATCT----CCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACG 71721 || || | ||| | || ||||||| ||| | | | ||| | || ||||| || Sbjct 1677486 CATATATATGCTCCAAC-ATGACAAACATAATCAGGACCAAAGAAGACAAGTTACAGACT 1677544 Query 71722 GCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATG 71781 || ||||||| | ||| | ||| ||||| ||||| | ||| || | |||||| Sbjct 1677545 GCAACCTCATCTTTTCTAGTATACTCTATTATTTCTGTGCATAAATTGCTGCCTTTGATG 1677604 Query 71782 G-TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGG 71840 | |||| | ||||| ||||| || || ||||| || || || | |||| | || Sbjct 1677605 GCCTCCT-AGTTTTGCTGATTGCTTTTCCAATTACAGCTGTCTTTGTAGAAAATATAAGG 1677663 Query 71841 AGTACCAGTTTCAATCTGAGATTCTATAATCGC--TTTC-----CAGACGAC---TCGAG 71890 | | || || || |||| || || || || || ||| || | || | | | Sbjct 1677664 AATCCCTGTCTCTGTCTGGGACTCAATGATAGCATATTCAATGATAGCCCACCTATTGGG 1677723 Query 71891 CCTTTA-----TTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC 71945 | |||| ||| | | || |||| ||||||| | | | | | || || Sbjct 1677724 CTTTTACAACCTTACAGACATG-ATCTTTTTTCTCATAACTTTCATTGACAT-----CTC 1677777 Query 71946 GAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCA 72005 || | ||||||||| |||| | |||| || ||||| |||||||||| || || Sbjct 1677778 AAATTTTTCTCCCCAAACATT---CAGACCAGATCACTCATTAGGACACATCAGGGAGCA 1677834 Query 72006 CTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 72064 || || || | | |||| || ||||||| || |||||||| | || | || | Sbjct 1677835 GTCCTGATTATTTTCCAAATGTTTGATGAAGAGATTTGGGATCCAAAG-GATAAAGAAAA 1677893 Query 72065 GATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 72124 |||||||| | ||||| || ||||| | || || || | ||| ||||| | | | Sbjct 1677894 TATCTCTGGCTTACTGCTCTTCCTTTCCAATGTTTTTCTTTAAATCAAGGAATTCAAAGA 1677953 Query 72125 TATCAGAATGCCACGGTTCCAAGTATATGGC 72155 | || | |||| ||||||||||| || || Sbjct 1677954 TGTCTAAGAGCCAGGGTTCCAAGTAGATAGC 1677984 Score = 120 bits (132), Expect = 4e-22 Identities = 233/342 (68%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 72700 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--TCCTCCATCA 72757 || || |||||||| | || | |||||| | ||||| ||||| |||||||||| Sbjct 1678611 ATTATTGGAGAATGCCTGACACTAGAAGGATTTATTTAGTT--ATAAAGGTCCTCCATCA 1678668 Query 72758 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 72817 | ||||| || | ||| |||| ||| || || | ||| | || |||||||| |||| Sbjct 1678669 CATCACTGAACACTTTCTTTGCTTCTTTATGCAAATTATAAACAATAATTCTGGCTGCTA 1678728 Query 72818 GAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGT 72877 ||||||||||||||| | || || || || || | | |||| |||||| || | Sbjct 1678729 AAATGGCATAATCTGGGTCTTTGGTGGTCAGGGTTGCAGTTGTTTCAACTGCCAAGGTAT 1678788 Query 72878 CCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAA 72937 | ||||| | || || || ||| ||||| ||||||||||| ||||| |||| || Sbjct 1678789 CTAATTCCCCTGTGGTCACCCCACTATATTATCCTTGGATAAGTTTCATGATGATTTGAA 1678848 Query 72938 TAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTT 72997 | |||| | | || |||| | | ||| | | ||| || | ||| || || | Sbjct 1678849 CATGATCAACAAATTCCATGTTGAGTCTATAGTAGAGTTTCTGTATCCTAGAAGTAATAT 1678908 Query 72998 TATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAACGA 73039 | |||||||| || | ||| || |||| || ||||| || Sbjct 1678909 TGTCAAACATGACCTCATCCTGGTGGCCATCTCATTTAATGA 1678950 >seq571 Length=175726 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||||||||||| ||| || ||||| || | ||| ||||||| || || || | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 42207 C 42207 | Sbjct 168944 C 168944 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| ||||||||| | |||||||| || || | || || || || ||||| |||||| Sbjct 172702 GACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCT 172643 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||||||| ||||| ||||| |||||||| ||||| Sbjct 172642 TCCAATGAGATATTCTCCATAAAATCAAATGGATT 172608 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || |||| ||| || || || | |||||||||||||| ||||| |||||||| || || Sbjct 166153 TCCTTAATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 166094 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | ||| || || | |||||||||| Sbjct 166093 ATTTGGAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTCT 166049 >seq6963 Length=4024090 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| |||||||| |||||||| ||||| || || | ||| | Sbjct 2874076 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 2874135 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 ||||||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2874136 TAAGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 2874195 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||| ||||| Sbjct 2874196 CGACCACTCTTTCTCC 2874211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 |||||||| || |||||||| ||||||||||||||||| ||||| | || || ||| Sbjct 2880229 AAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGAAA 2880288 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTAC 42564 ||||| || || | | | | ||| ||||||| | | |||||| |||| ||| || Sbjct 2880289 TATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTTGATAAATCAAC 2880344 >seq22439 Length=3559855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 89775 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAGATAGTTATAGTA 89834 |||||||||||||| |||||| ||||| |||||||||| | || |||| || || ||| Sbjct 3349012 TTTCCAGACATTGTAGAATTCAGTGAGAGTATGGCAAATGCCGGGAAGACTGTGATTGTA 3349071 Query 89835 GCCGCACTCGATGGGACATTTCA 89857 || ||||| |||||||| ||||| Sbjct 3349072 GCTGCACTGGATGGGACCTTTCA 3349094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670837405480240