Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq571 114 1e-20 seq6963 111 1e-19 >seq571 Length=175726 Score = 114 bits (126), Expect = 1e-20 Identities = 108/135 (80%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| ||||| || || ||||| |||| || ||||| | |||||||| || Sbjct 169062 TCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 169003 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || ||||||||||| |||||||| ||| Sbjct 169002 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 168943 Query 13295 ATCAAC-CTTTCACC 13308 | |||| | |||||| Sbjct 168942 A-CAACACGTTCACC 168929 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || |||| | || ||||| | ||||| || ||||| ||||| ||||||| Sbjct 172704 TTGACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTC 172645 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 |||| || || ||||| ||||||||||| || ||||||| Sbjct 172644 CTTCCAATGAGATATTCTCCATAAAATCAAATGGATTTT 172606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||||||||| || || | || ||||||||||| ||||| || |||||||| || ||||| Sbjct 166148 AATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 166089 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || || | || ||| ||||| Sbjct 166088 GAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTC 166050 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || ||||| || || ||||||||||||||| || |||||||| || ||||| Sbjct 172471 TCTGTCTGCTACAAATTCAATATACTGTTTCATTAAAGTGCAATTCATTCCAATCAATTT 172412 Query 13042 TACAGGCATAGCTTCTGTTAAAAA 13065 |||||||| |||||| || || || Sbjct 172411 TACAGGCAAAGCTTCAGTCAAGAA 172388 >seq6963 Length=4024090 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || ||||| || || || |||||||| |||| || ||| Sbjct 2874078 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 2874137 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||||||||||||||||||||||||||| || || || ||||| || || || || || Sbjct 2874138 AGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAGCG 2874197 Query 13295 ATCAACCTTTCACC 13308 | || ||||| || Sbjct 2874198 ACCACTCTTTCTCC 2874211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430793443039548