Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq22584 87.8 9e-13 seq22408 86.0 3e-12 seq27010 82.4 4e-11 seq22450 82.4 4e-11 seq22337 82.4 4e-11 seq7031 82.4 4e-11 seq176 82.4 4e-11 >seq22584 Length=4137260 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||||| || |||||| | |||||||||| ||||||| |||||||||||| Sbjct 4043806 TAAAAAAAAAAGGAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 4043747 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 4043746 CCACGCTCTAACCAACTGAGCTAACCGGCC 4043717 Score = 84.2 bits (92), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4024644 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4024703 Query 11528 CCGTCGACGATTGTGATTTTTC 11549 || | |||| | | |||||| Sbjct 4024704 CC--CCACGAGAGCGGTTTTTC 4024723 Score = 84.2 bits (92), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4065549 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4065608 Query 11528 CCGTCGACGA 11537 || || |||| Sbjct 4065609 CCCTC-ACGA 4065617 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3970267 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3970208 Query 11528 CC 11529 || Sbjct 3970207 CC 3970206 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4027963 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4028022 Query 11528 CC 11529 || Sbjct 4028023 CC 4028024 >seq22408 Length=2167069 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || |||||| | |||||||||| ||||||| ||||||||||||| |||| Sbjct 128109 AAAAT--AACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 128052 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||| |||||||||||||| ||||| || Sbjct 128051 TCTAACCAACTGAGCTAACCGGCCGCCG 128024 >seq27010 Length=1595 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 901 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 842 Query 11528 CC 11529 || Sbjct 841 CC 840 >seq22450 Length=1932348 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1088859 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1088800 Query 11528 CC 11529 || Sbjct 1088799 CC 1088798 >seq22337 Length=2413889 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 17854 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 17913 Query 11528 CC 11529 || Sbjct 17914 CC 17915 >seq7031 Length=2284960 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2017304 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2017363 Query 11528 CC 11529 || Sbjct 2017364 CC 2017365 >seq176 Length=1810361 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 11133 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 11074 Query 11528 CC 11529 || Sbjct 11073 CC 11072 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261376553596024