Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq22347 138 2e-27 seq891 86.0 9e-12 >seq22347 Length=2972275 Score = 138 bits (152), Expect = 2e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 ||||||| |||| ||| || ||| |||||| |||||||| |||| || | || |||| Sbjct 2057460 TGGTCTGGAACAATTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACA 2057519 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 ||| ||| || || | ||||| || |||||||||||||| | ||| || |||||||||| Sbjct 2057520 CTCGGTTATGCTCTCGAAGCCATATTGTAGCGTACATCATTAAACCTGGAACCAGGCCAA 2057579 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | | |||||||| ||||| | || || || || || | || ||||||||||| | Sbjct 2057580 ATACTTCTTGACCAACAGCAAATTTCAGATGCTCAGGAACATGAGGTGGATAGATCATTT 2057639 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||| |||||| || | || ||||| | ||| || ||||| Sbjct 2057640 CTGCCTGAGTATCTTTCACTAAAGGTGGATATACTTCTCCATCAAT 2057685 Score = 125 bits (138), Expect = 1e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 |||||||||||||| ||| |||| |||||||| ||||||| ||| || |||| Sbjct 2058981 CTTACCCCATGTCCTAGTGCTTTTGTGAAGGCTGGGCCTCTGTGATGATCTGTTTTAAAG 2059040 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||||||||| |||| || |||||||| | || ||||| ||||| || Sbjct 2059041 AACTGGTGAGTGAAATGTTGAGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGGTCA 2059100 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAttt 10208 ||| | || | || | |||||| |||||||||||| | | | || || || | | Sbjct 2059101 GGAATAAACTTTCTTCTCAGAAGACATTTTTCCACAACTTCTTTGGATTCAGGAAGTTGT 2059160 Query 10209 tttttACCT 10217 ||||||||| Sbjct 2059161 TTTTTACCT 2059169 >seq891 Length=45060 Score = 86.0 bits (94), Expect = 9e-12 Identities = 119/165 (72%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | ||||||||| || |||||||| ||||| || ||| |||| || || Sbjct 26116 TCACCTATGAGGATGAGTCGGGTTGTCTGAAAGAGTTGCTCATCATTCCAGGTGGGGTG- 26174 Query 9670 TCTCGTTTCAGAACATCGCACA--CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACA 9727 ||| | || || || |||| | | || || |||| |||||||| ||||| |||| Sbjct 26175 -CTCATCTCGCAAGATGTCACAGACACGATTATGCTCCCGAAGCCAGATGGTAGCATACA 26233 Query 9728 TCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9772 ||||||| || || | ||| ||||| |||| || || || |||| Sbjct 26234 TCATGAGGCCTGGGAGCAGCCCAAACACCTCCTGGCCCACGGCCA 26278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708206194110560