Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7240 154 1e-32 seq22615 134 1e-26 seq7502 113 4e-20 seq22477 102 7e-17 seq22597 100 3e-16 seq6982 98.7 9e-16 seq33301 84.2 2e-11 >seq7240 Length=45712 Score = 154 bits (170), Expect = 1e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||| || ||||| ||||| |||| |||||||| | || ||||| || || | ||| | Sbjct 7310 TTTAGACACCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGT 7251 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || || ||| |||||||| ||||| ||||||| ||||| ||||| | Sbjct 7250 AGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGT 7191 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||||||||| | |||||| |||||||| | | |||||| | Sbjct 7190 CTGGGGGAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGG 7131 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| ||||||||||| || || | |||||||||||||||||||| Sbjct 7130 GCTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 138 bits (152), Expect = 1e-27 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||||||||| || ||||| || || | ||| || || | Sbjct 6230 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 6171 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | ||| |||||||| |||||| ||||||| ||||| ||||| ||||| | Sbjct 6170 A-AG-GTTCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGG 6113 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | |||||| |||||||| | | |||||| | | || | Sbjct 6112 GAATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 6053 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| |||||||| || ||||| | || ||||||||||||||||| Sbjct 6052 CTTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6004 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||||||||| ||||||||||| || | ||| || || | Sbjct 6458 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 6399 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| ||||| |||| |||||||| ||||||||||| || Sbjct 6398 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGG 6339 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || ||||||||||| | | |||||| | | || || Sbjct 6338 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 6279 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || | || ||||| || |||||||| Sbjct 6278 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22615 Length=203576 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||||||||| || |||||||| || | ||| || || | Sbjct 193096 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 193037 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || ||| |||||||| ||||| ||||||| ||||| ||||||||||| || Sbjct 193036 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 192977 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || ||||||||||| | | |||||| | | || || Sbjct 192976 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 192917 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||||||||| ||||| | || ||||||||||||||||| Sbjct 192916 TCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | || ||||| | ||| ||||| || || | ||| || || | Sbjct 192868 CCACCTCTGAGACGAAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 192809 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| |||||| |||| || ||||| ||||| ||||| || Sbjct 192808 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAAATCAATCTCTGCTGGTCTGGGGGG 192749 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || |||||||| || | || ||||||||||| Sbjct 192748 ATGCCTTCTTTATCCTGGATCTTTGCCTTGAC 192717 >seq7502 Length=209603 Score = 113 bits (124), Expect = 4e-20 Identities = 165/232 (71%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||||| ||| ||||| | || ||||||| || || | ||| || || | ||| | Sbjct 175007 TTTACACACCTTTCCTCAAACCCAGAACCAAGTACAGGGTGGGTTCTTTCTGGATGTTGT 174948 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| || |||| ||| |||| ||||||||| ||| |||| || Sbjct 174947 AGTC----AGGGTGCCACCATGTTCCAACTGCTTTCTAGCAAAGATTA-TCTCTGCTCAT 174893 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| ||||||||||| | ||||| | |||||| | | |||||| | Sbjct 174892 CTGGAGGAATGCCTTCTTTGTCTTGCATTTTGGTCTTGACATTCTCAAGGGTGTCACTGG 174833 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 | || | |||| ||||||||||| ||||| | | |||||||||||||||| Sbjct 174832 GCTCTGCTTCAAGAGTGATGGTTTTACCAGTCAAAATTTTCACAAAGATCTG 174781 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| ||| | ||||||| || | | ||||||| ||||||||||| || Sbjct 174249 ATCTTCCAGCTGGTTTTCAGCAAAGATCAAGTTCTTCTGATCTCAGGGAATACCTTCCTT 174190 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||||||||||| | | | | || | | | ||||| | || ||||| Sbjct 174189 GTCTTGAATTTTTGCCTTGAAATTGTCAATGGCGTTACTGGGTTCGACTTTAAAGGTGAT 174130 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| || ||||| | || ||||| | || | ||| Sbjct 174129 GGTCTTGCCAGTCAAGGTCTTCACGATGAGCCGCA 174095 >seq22477 Length=3372135 Score = 102 bits (112), Expect = 7e-17 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| ||| | ||||||||||| | ||||||||||| ||||| ||||| || Sbjct 1488332 ATCTTCCAGCTGCTTTTCAGCAAAGATTAATATCTGCTGATCTGGGGGAATGCCTTCCTT 1488273 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| || ||||| |||||||| | | ||| ||| |||| | | |||| ||||| Sbjct 1488272 GTCTTAGATTTTGGCCTTGACATTTTCAATAGTATCACCGTGTCCCATTTCAAGGGTGAT 1488213 Query 94972 --GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || | | ||| |||| ||| |||||||| Sbjct 1488212 CAGGTCTTGGCAATCAAAGTATTCATAAAAATCTGCAT 1488175 >seq22597 Length=1249212 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || ||||| || || |||||| Sbjct 1181934 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181875 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| || ||||| | | ||||||| | | || || || | |||||| Sbjct 1181874 TCTTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 1181815 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||||||||||||||| Sbjct 1181814 GTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || ||||| || |||||||| Sbjct 1182760 ATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTT 1182701 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| || ||||| | | ||| ||| | | || || || | ||||| Sbjct 1182700 GTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGAT 1182641 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||||||||||||||| Sbjct 1182640 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || ||||| || || ||||| Sbjct 1181707 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTT 1181648 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| || ||||| | | ||| ||| | | || || || | ||||| Sbjct 1181647 GTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGAT 1181588 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||||||||||||||| Sbjct 1181587 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || ||||| || || |||||| Sbjct 1181478 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181419 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| | ||||| | | ||| ||| | | || || || | |||||| Sbjct 1181418 TCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATG 1181359 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||||||||||||||| Sbjct 1181358 GTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324 >seq6982 Length=3457922 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| ||||| || | | ||||| ||||| ||| | ||||| |||||||| Sbjct 878074 ATCTTCCAGCTGGTTTCCAGCACA--TCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTT 878131 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | |||||| |||||||| | | || ||| | | || || |||| ||||| Sbjct 878132 ATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGAT 878191 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 |||||| || || | ||||||||||||||||| Sbjct 878192 GGTTTTACCGGTCAAGGTTTTCACAAAGATCTG 878224 >seq33301 Length=39358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| |||||| ||||||| || || |||||||| | | ||| |||||||| Sbjct 1145 ATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCAGGGCAATGCCTTCTTT 1204 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||| ||| | | |||||| || | || | ||| ||||| Sbjct 1205 GTCCTGAATCTTTGCCCTGATGTTCTTAATGGTGTCACCGGGCTCCATTTCAGGTGTGAT 1264 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || ||||| | || |||| ||| |||||||| Sbjct 1265 GCTCTTACCAGTCAAGGTCTTCATAAA-ATCTGCAT 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448089614654640