Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq22772 152 8e-33 seq22584 150 3e-32 seq23105 134 2e-27 seq22448 132 8e-27 >seq22772 Length=136886 Score = 152 bits (168), Expect = 8e-33 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || ||||| ||||| |||||||| ||||||||||| ||||| Sbjct 67369 TCTCCGGGATAACATCCAGGGCATCACTAAGCCCGCTATCCGCCGTCTGGCTCGGCGTGG 67428 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| |||| || | |||| || |||| || | || ||||| | || Sbjct 67429 GGGCGTCAAGCGTATCTCGGGTCTCATCTACGAGGAGACCCGCGGGGTGCTGAAGGTATT 67488 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| |||| || || || ||| ||||||||||| || | ||||| || Sbjct 67489 CTTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGT 67548 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||| ||||||| | |||||||| | || || || ||||| Sbjct 67549 CACCGCCATGGACGTGGTCTATGCCCTTAAGCGCCAGGGCCG 67590 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| || ||||| ||||||||||| || || Sbjct 53393 CTCCGGGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGGCGCGGG 53452 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | | || || |||| || | || ||||| | ||| Sbjct 53453 GGCGTCAAGCGTATCTCGGGGCTCATTTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTC 53512 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 53513 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 53572 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | || || || ||||| Sbjct 53573 ACCGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGGCCG 53613 >seq22584 Length=4137260 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| || ||||| ||||||||||| || || Sbjct 4117082 CTCCGGGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGGCGCGGG 4117023 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || ||||| | ||| Sbjct 4117022 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTC 4116963 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 4116962 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 4116903 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || | ||||| || ||||| Sbjct 4116902 ACCGCCATGGACGTGGTCTACGCCCTAAAACGCCAGGGCCG 4116862 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || |||||||||||||| || ||||||||||| || ||||||||||||||||| || || Sbjct 4093209 CTCCGAGATAACATCCAGGGCATCACCAAGCCTGCCATCCGTCGTCTGGCTCGGCGCGGG 4093268 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | | ||||| |||| || | || |||| | ||| Sbjct 4093269 GGCGTTAAGCGAATCTCGGGGCTCATTTATGAGGAGACCCGCGGCGTGCTGAAAGTGTTC 4093328 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 4093329 TTAGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 4093388 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | ||||| || | || || || || |||| | || || ||||| Sbjct 4093389 ACTGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGGACGTACCCTCTACGGCTTTGG 4093447 >seq23105 Length=22628 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || || ||||||||||| || || Sbjct 20044 CTGCGGGACAACATCCAGGGTATCACCAAGCCTGCCATTCGGCGTCTGGCTCGGCGAGGG 20103 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || ||||| ||||| Sbjct 20104 GGTGTCAAGCGTATCTCGGGGCTGATCTACGAGGAGACCCGCGGCGTGCTGAAGGTCTTC 20163 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || || ||| || |||||||| || | ||||| ||| Sbjct 20164 TTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGAGGAAGACCGTC 20223 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | ||||| || | || || || ||||| | | || || ||||| Sbjct 20224 ACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCACTCTGTACGGCTTTGG 20282 >seq22448 Length=196367 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| |||||||| || |||| || | ||||| Sbjct 51714 CGCGATAACATCCAGGGTATCACCAAGCCTGCTATCCGCCGCTTGGCGCGCAGGGGTGGC 51773 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| |||| || || |||| || |||| || | || | ||| |||| | Sbjct 51774 GTTAAACGTATCTCGGGGCTGATCTACGAGGAGACCCGCGGGGTGCTCAAGGTCTTTTTG 51833 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || ||| || |||||||| || | ||||| ||||| Sbjct 51834 GAGAACGTGATCCGCGACGCCGTCACCTACACGGAGCACGCCAAGAGGAAGACCGTCACG 51893 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | ||||| || | ||||| || ||||| | | | |||||||| || || Sbjct 51894 GCCATGGACGTGGTCTACGCCCTCAAACGCCAGGGCCGCACGCTCTATGGTTTCGGCGGT 51953 Query 16697 TAA 16699 ||| Sbjct 51954 TAA 51956 Score = 132 bits (146), Expect = 8e-27 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| || || ||||| || || |||||||| ||||| |||||||| Sbjct 126029 CGGGATAACATCCAAGGCATTACTAAGCCTGCCATTCGTCGTCTTGCTCGGCGTGGTGGC 125970 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| |||| || || ||||||| || | || | || | ||| | ||| | Sbjct 125969 GTCAAGCGGATCTCAGGCCTGATCTATGAGGAAACCCGCGGGGTACTCAAGGTATTCTTG 125910 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||||||| ||||| | || || ||||||||||| | |||||||| || Sbjct 125909 GAGAATGTTATCCGGGATGCCGTGACTTACACTGAGCACGCTAAGAGAAAGACTGTGACT 125850 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | || ||||| | ||||| || ||||| | | |||||||| || Sbjct 125849 GCTATGGACGTGGTGTATGCGCTCAAACGACAGGGCCGCACTCTATATGGTTTCGG 125794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79042308719982