Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq30399 145 9e-30 seq15323 123 3e-23 seq571 120 4e-22 seq6963 114 2e-20 seq27249 100 4e-16 seq22439 82.4 1e-10 >seq30399 Length=2248691 Score = 145 bits (160), Expect = 9e-30 Identities = 897/1411 (64%), Gaps = 84/1411 (6%) Strand=Plus/Plus Query 61973 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62032 ||| | ||| ||||| | || | ||| |||||| | | | || | | | || | | Sbjct 1676624 TTTAAGTTTTTCCTTCTTCAGAGAGAACTGAATGAGTTAGAA-GCTGATCTTGTCCTCAA 1676682 Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092 ||| |||||||| | || ||| | ||| || || || || || || || | ||| Sbjct 1676683 ATAATACATTCCAGGATTCAGATTCTGCGTCCTACCATAGAAGTGGATGCTGGTAATTTT 1676742 Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152 ||| | || || || || |||||||||| ||| ||||| ||||| ||||| || Sbjct 1676743 CCTTTAAGTGGGCTCAGCAATGTGGATATTCAAAGACTGACTCTGATCAATGAATATCCC 1676802 Query 62153 CCTGTCTGCAGCCATTTTTATGATC-GTCTTTTGTGGAATTTCCCAAATAGTTTTATA-A 62210 | | || || |||| | || | || || |||| |||||| | | | | ||||| | Sbjct 1676803 CTTATCAGCCACCATACTG--GAACAGTTTTGTGTGCCATTTCCAACACAATCTTATACA 1676860 Query 62211 ACTCGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTGCCATA 62267 |||| || | |||||| |||| | || || |||||| || || || ||| || Sbjct 1676861 ACTCA-TTCAGATCTTCAGGAATTTCAGTGATATACTGAATAGAGACATCACATGCAATT 1676919 Query 62268 ATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGC 62327 ||| || || ||||| |||||||||| | ||| || | | || || | || Sbjct 1676920 ATCTGGTTTTT-ATCTCTTCATTCCATAGGCCTTGCTCTGTCAGATCTTCCAGCAAGTG- 1676977 Query 62328 GGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62387 || |||||| ||| |||||| ||||||||||||| ||||| || Sbjct 1676978 --------------AACTTCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAA 1677023 Query 62388 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62447 ||||| |||| |||||| || ||||| ||| | ||| | ||||| || || Sbjct 1677024 GGTTCTGTGGACTGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCA 1677077 Query 62448 ACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 62507 | || ||||| ||||| | || | | || || | || | ||| || ||||||| Sbjct 1677078 AACAGCAAACTGTTTCTGATGCCAT-TATTTTGCAATATTCGTG-AGAATTTTCCAATTC 1677135 Query 62508 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGC 62563 || || || || || ||| ||||| | || ||||| Sbjct 1677136 CACAGTTCTATAGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGA 1677195 Query 62564 GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTC 62623 | | ||| ||||||| || ||||| || | || | || | ||||| || |||| Sbjct 1677196 G----AGCCTTCATATGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTC 1677251 Query 62624 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 62683 | |||| ||||||||||||| ||||||| |||||||| ||| || || | | Sbjct 1677252 CTAGTCACCACAATAAATGGTTTCAAAGATCTGTTTATTTAGCAATTGGGCCTCTGGAGT 1677311 Query 62684 ATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC-TAATCCTTGAACACCAATACCGA 62742 ||||| ||||| || | || ||||| || || || | || | || | | |||||| | Sbjct 1677312 GTCAAAAGGATACTTCATCAGGATAAA-GCATCAGCTTGATTC-TGCTCTCTAATACCAA 1677369 Query 62743 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCT-GGAATAGGATAATAATTAATATCT 62801 | || ||| | ||||| || | || ||| || || | |||| | | || || Sbjct 1677370 TGGGGTGATGACATTTATTTGACAAACTTGCCTCTAGGGCTA-GTTAAT-AGTGATGTCA 1677427 Query 62802 ATAATTTTATTGAGATTTCTG-ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC 62860 ||||||||||| | | || || ||||| |||||| | || |||||| | || | Sbjct 1677428 ATAATTTTATTTA-AGTTGTGTACAATGACTTTGGTACCTTCAGCCAGTTTCTGGAAGCC 1677486 Query 62861 AAAT---CGC-CCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGG 62916 | || || ||| | || |||||||| ||| | | | ||| | || ||||| || | Sbjct 1677487 ATATATATGCTCCAAC-ATGACAAACATAATCAGGACCAAAGAAGACAAGTTACAGACTG 1677545 Query 62917 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 62976 | ||||||| | ||| | |||||| || ||||| | ||| || | ||||| | Sbjct 1677546 CAACCTCATCTTTTCTAGTATACTCTATTATTTCTGTGCATAAATTGCTGCCTTTGATGG 1677605 Query 62977 -TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 63035 |||| | ||||| ||||| || || ||||| || || || | ||| | ||| Sbjct 1677606 CCTCCT-AGTTTTGCTGATTGCTTTTCCAATTACAGCTGTCTTTGTAGAAAATATAAGGA 1677664 Query 63036 GTACCAGTTTCAATCTGAGATTCTATAATCGC--TTTC-----CAGACGAC---TCGAGC 63085 | || || || |||| || || || || || ||| || | || | | || Sbjct 1677665 ATCCCTGTCTCTGTCTGGGACTCAATGATAGCATATTCAATGATAGCCCACCTATTGGGC 1677724 Query 63086 CTTTA-----TTATAGATTTGTATCTCCTTTCTC-TTTCGTATAGTGTATACAATCGTTC 63139 |||| ||| ||| || |||| |||||| | | | | || || ||| || Sbjct 1677725 TTTTACAACCTTACAGACATG-ATCTTTTTTCTCATAACTTTCATTG---AC-ATC--TC 1677777 Query 63140 GAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 63199 || | |||||||||||||| || |||| || |||| |||||||||| || || Sbjct 1677778 AAATTTTTCTCCCCAAACATT---CAGACCAGATCACTCATTAGGACACATCAGGGAGCA 1677834 Query 63200 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATA 63258 || | || | || |||| || ||||||| || |||||||| | || | || | Sbjct 1677835 GTCCTGATTATTTTCCAAATGTTTGATGAAGAGATTTGGGATCCAAAG-GATAAAGAAAA 1677893 Query 63259 GATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63318 |||||||| | || || || ||||| | || || || | ||| ||||| | | | Sbjct 1677894 TATCTCTGGCTTACTGCTCTTCCTTTCCAATGTTTTTCTTTAAATCAAGGAATTCAAAGA 1677953 Query 63319 TATCAGAATGCCACGGTTCCAAGTATATGGC 63349 | || | |||| ||||||||||| || || Sbjct 1677954 TGTCTAAGAGCCAGGGTTCCAAGTAGATAGC 1677984 Score = 129 bits (142), Expect = 7e-25 Identities = 235/342 (69%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 63894 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--TCCTCCATCA 63951 || || |||||||| | || | |||||| | ||||| ||||| |||||||||| Sbjct 1678611 ATTATTGGAGAATGCCTGACACTAGAAGGATTTATTTAGTT--ATAAAGGTCCTCCATCA 1678668 Query 63952 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 64011 | ||||| || | ||| |||| ||| || || | ||| | || |||||||| |||| Sbjct 1678669 CATCACTGAACACTTTCTTTGCTTCTTTATGCAAATTATAAACAATAATTCTGGCTGCTA 1678728 Query 64012 GAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGT 64071 |||||||||||| || | || || || || || | | |||| |||||| || | Sbjct 1678729 AAATGGCATAATCTGGGTCTTTGGTGGTCAGGGTTGCAGTTGTTTCAACTGCCAAGGTAT 1678788 Query 64072 CCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAA 64131 | ||||| | || || || ||| ||||| |||||| |||| ||||| |||| || Sbjct 1678789 CTAATTCCCCTGTGGTCACCCCACTATATTATCCTTGGATAAGTTTCATGATGATTTGAA 1678848 Query 64132 TAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTT 64191 | |||| | | ||| |||| | | ||| | | ||| || | ||| || || | Sbjct 1678849 CATGATCAACAAATTCCATGTTGAGTCTATAGTAGAGTTTCTGTATCCTAGAAGTAATAT 1678908 Query 64192 TATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGA 64233 | ||||||||||| | |||| || |||| || |||||||| Sbjct 1678909 TGTCAAACATGACCTCATCCTGGTGGCCATCTCATTTAATGA 1678950 >seq15323 Length=1134477 Score = 123 bits (136), Expect = 3e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| |||| ||||||||||| |||||||| ||||| || ||||| | Sbjct 902711 ACCTGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATG 902652 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| || ||||| |||||||| || ||||| ||||| || || | || ||| Sbjct 902651 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAA 902592 Query 62457 CTATTTCT 62464 || ||||| Sbjct 902591 CTGTTTCT 902584 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 || ||| ||||||| || ||||| || | || || || | ||||| || || || || Sbjct 895832 GACCCTTCATATGTTTCATATGGGCCATACTCCTTGGCCAAGTCACAGCTGGCTTCCAAG 895773 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 ||||| |||||||||||||| ||||||| ||||| | || || || | || ||| Sbjct 895772 GCACCATAATAAATGGTTTCAAAGATCTGTTTATTCAACAACTGGGCCTCTGGACTCTCA 895713 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 || ||||| | | || ||||| || || |||| ||||| || || ||||| ||||| Sbjct 895712 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCTTGCACTCCGATACCAATAGGG 895653 Query 62748 CTATGTCTCTTATTAGA 62764 | ||| | ||||| || Sbjct 895652 CGATGACGTTTATTTGA 895636 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || ||| |||||||| |||||||| ||||||||||| || | || ||||| |||| || Sbjct 890657 CTCCACACGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCTCG 890598 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || || || || ||||| || | ||| ||||| | | || || | ||||| Sbjct 890597 CTGCTCTTCCTTCCCAGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAGTGCCA 890538 Query 63332 CGGTTCCAAGTATATGGC 63349 |||||||||||| ||||| Sbjct 890537 CGGTTCCAAGTAGATGGC 890520 >seq571 Length=175726 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||||||||||||||| || ||||| || | ||| ||||||| || || || | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| |||||||| || || || |||||||||||||||||||| || || ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 33446 C 33446 | Sbjct 168944 C 168944 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| ||||||||| | |||||||| || || | || || || || |||||||||||| Sbjct 172702 GACATCACTCCCATTCTCTGGTATTCTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCT 172643 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||||||| ||||| ||||| |||||||| ||||| Sbjct 172642 TCCAATGAGATATTCTCCATAAAATCAAATGGATT 172608 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || |||| |||||| || || | |||||||||||||| ||||| |||||||| || || Sbjct 166153 TCCTTAATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 166094 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || || || || |||||||| | || || || |||||||||||| | ||| || ||| Sbjct 166093 ATTTGGAAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTCTTGGCTAAACCGCTCC 166034 Query 33685 GCC 33687 || Sbjct 166033 ACC 166031 >seq6963 Length=4024090 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| | Sbjct 2874076 CCTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 2874135 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 ||||||||||||| | ||| || || || || ||||| || |||||||| ||||| || | Sbjct 2874136 TAAGCCAAAATATAGCAGCAAACGAACCCGAGAAGAAAATCCCTTCTACAGCAGCGAAAG 2874195 Query 33446 CAATAAGTCTCTCTCC 33461 | | | ||| ||||| Sbjct 2874196 CGACCACTCTTTCTCC 2874211 Score = 100 bits (110), Expect = 4e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||||||||||||| |||||||| ||||||||||||||||| ||||| | || || | Sbjct 2880227 CCAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATGA 2880286 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 ||||||| || |||| | | ||||| ||||||| | | |||||| |||| ||| || Sbjct 2880287 AATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTTGATAAATCAAC 2880344 >seq27249 Length=297398 Score = 100 bits (110), Expect = 4e-16 Identities = 251/368 (68%), Gaps = 20/368 (5%) Strand=Plus/Minus Query 33390 CCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAAT 33449 ||| ||||| || || || || ||||||| || ||||||| || || |||||||| | Sbjct 100931 CCAGAATATTGATGCAAAAGAATCAGAAAAAAA--TTCCTTCAACAGCTGCAAAGGCTAG 100874 Query 33450 AAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCT 33508 | | || ||||| | ||| || | | ||| | | ||| || || || |||| Sbjct 100873 TACACATTCACCATAT--GTTGCT-TCTT-TGTCCCCAATCCAGCACAGTCCAGCTTTCT 100818 Query 33509 TTTTTACACAAGGCA-TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 33567 |||| ||| ||| | | ||||| ||| |||| |||||| | | |||| || || Sbjct 100817 TTTTAACATGAGGTAGTGGTTTCAATGCCATTGAAGAGAAATTCCATTTCCTTTGAGCCT 100758 Query 33568 TTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33627 |||| || ||| || || | ||||| || ||||| ||||| ||||||| || | || Sbjct 100757 TTAATATGAGTGTCAATAAGGAGACTGTATATTTCAGAATG--TGTTTTCCATAGTAATT 100700 Query 33628 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT--GTACAAAATCGTTCCG 33685 || || | ||||| || | || | || |||||| || | || || || ||| Sbjct 100699 TGGAAGACATAGAAGCAACAGGCTTATGT--TCTGTATTTGTTGGTTCATTG-CGGTCC- 100644 Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| ||| |||| || || |||| |||||||| || ||||||||||| ||||| Sbjct 100643 -CAAGTTTGCATTTTCT---CCATCACATGCTGCAAAGAAGGCCAATACATGAAATATAA 100588 Query 33746 AATATTTT 33753 |||||||| Sbjct 100587 AATATTTT 100580 >seq22439 Length=3559855 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 80982 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 81041 |||||||||||||| |||||| ||||| |||||||||| | || || | || || ||| Sbjct 3349012 TTTCCAGACATTGTAGAATTCAGTGAGAGTATGGCAAATGCCGGGAAGACTGTGATTGTA 3349071 Query 81042 GCCGCACTCGATGGGACATTTCA 81064 || ||||| |||||||| ||||| Sbjct 3349072 GCTGCACTGGATGGGACCTTTCA 3349094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622667076217840