Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7240 107 2e-18 seq22615 98.7 9e-16 seq22597 84.2 2e-11 >seq7240 Length=45712 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || || || ||| | || ||| | ||||| ||| ||| Sbjct 7076 ATGCAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 7135 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| || ||| |||||||||||||| || || || || Sbjct 7136 GACACCATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCAG 7195 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || ||||| || ||||||| | | | | || || ||| Sbjct 7196 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 7255 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || |||| || || | | ||||| ||||| Sbjct 7256 ATCCAGAAAGAATCCACCCTTCACTTGGTCCTGCGCTTGAGGGGAGG 7302 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || || | || ||| | ||||| ||| ||| Sbjct 6232 ATGCAGATTTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTTGAAGTAGAGCCCAGT 6291 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| || ||||||||||| || || ||||| Sbjct 6292 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 6351 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | |||| | || ||||| || ||||||| | | | | || || ||| Sbjct 6352 CAGAGATTAATTTTTGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 6411 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || |||||||| Sbjct 6412 ATCCAGAAGGAATCTAC 6428 >seq22615 Length=203576 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| ||| | || ||| | ||||| ||| ||| Sbjct 192870 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 192929 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| || ||||||||||| || || ||||| Sbjct 192930 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 192989 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 |||||| |||| | | || ||||| || ||||||| Sbjct 192990 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATG 193026 Score = 82.4 bits (90), Expect = 7e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| | ||||| || ||| || ||||| || | ||||| |||||| || Sbjct 192678 ATCACCCTTGAAGTAGAACCCAGTGATACCATTGAAAATGTCAAGGCAAAGATCCAGGAT 192737 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 ||||||||||| || || || || |||||| |||||| | ||| ||||| || |||||| Sbjct 192738 AAAGAAGGCATCCCCCCAGACCAGCAGAGATTGATTTTTGCCGGAAAGCAGCTGGAAGAT 192797 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | | | | | || || ||||| || |||||||| || |||| ||||| Sbjct 192798 GGTCGCACCCTGTCTGACTACAACATCCAGAAAGAATCAACTCTTCACTTAGT 192850 >seq22597 Length=1249212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || | || ||| | ||||| ||| ||| Sbjct 1182605 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAAGTGGAGCCCAGT 1182664 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | |||||| || || |||||||||||||| ||||| || || Sbjct 1182665 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 1182724 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | |||||||| || ||||||| | | | | || || ||| Sbjct 1182725 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1182784 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || |||||||| || ||||| Sbjct 1182785 ATCCAGAAAGAATCCACCCTTCAT 1182808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429747501815970