Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq22597 123 2e-23 seq7240 96.9 3e-15 seq22615 86.0 5e-12 >seq22597 Length=1249212 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||| || ||||| || || || ||||||||||| | | Sbjct 1181550 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181491 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 1181490 AGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181431 Query 16829 ACGCCCTCTTTGTC-GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||||||||| | | |||| | || || | | | ||| || | ||||||| Sbjct 1181430 ATGCCCTCTTTGTCTTGGATTTTGGT-TTTGACATTCTCAATAGTATCACTGGGCTCCAC 1181372 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||||||| || || ||||| ||||| ||||| ||||||||| || Sbjct 1181371 CTCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATTGTG 1181320 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||| || ||||| || || || ||||||||||| | | Sbjct 1181778 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181719 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 1181718 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181659 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || || ||| || || | | | ||| || | ||||||| Sbjct 1181658 ATGCCCTCTTTGTCTTGGATTTTGGCT--TTGACATTCTCAATAGTATCACTGGGCTCCA 1181601 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| || || ||||| || || ||||| |||||||| Sbjct 1181600 CTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||| || ||||| || || || ||||||||||| | | Sbjct 1182831 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1182772 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | ||||||| ||| ||||| ||| Sbjct 1182771 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGG 1182712 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| || || | | | ||| || | ||||||| Sbjct 1182711 ATGCCTTCTTTGTCTTGGATTTTGGCT--TTGACATTCTCAATAGTATCACTGGGCTCCA 1182654 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 1182653 CTTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 16779 CGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTT 16838 |||| |||| || ||||| ||| | || |||| ||| ||||| ||| | |||||||| Sbjct 1181936 CGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTT 1181877 Query 16839 TGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGT 16896 |||| |||| ||| || || | | | |||||| | ||||||| |||| ||| Sbjct 1181876 TGTCTTGGATTTTGGCT--TTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGT 1181819 Query 16897 GATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||| || ||||| || || ||||| |||||||| Sbjct 1181818 GATGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7240 Length=45712 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || || ||||| || || || ||||||||||| | || ||| | || Sbjct 7288 CAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATC 7229 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || || || ||| | || | | ||| ||||| || | ||| |||||||| Sbjct 7228 TTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 7169 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||||| ||| || | | | ||||| | ||||||| ||| | ||||||||| Sbjct 7168 TTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGT 7109 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||||| ||||| ||||| |||||||| Sbjct 7108 TTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||| || || || ||||||||||| | Sbjct 6231 CCCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 6172 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| | || |||| || || || ||| | || | | ||| ||||| || Sbjct 6171 CAAGGTTCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGG 6112 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| ||||| ||| || | | | ||||| | ||||||| Sbjct 6111 AATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 6052 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| | ||||||||| || || |||| || || ||||| ||||||||| Sbjct 6051 TTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 6003 >seq22615 Length=203576 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||| ||||| || ||||||||||| | Sbjct 193097 CCCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 193038 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| || || || ||| | || | | ||| || || || Sbjct 193037 CAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 192978 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| ||||| || || ||||| ||| || | | | ||||| | ||||||| Sbjct 192977 GATGCCTTCTTTATCCTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTGGGCTCC 192920 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||| || |||| || || ||||| |||||||| Sbjct 192919 ACTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404910396002260