Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7240 109 4e-19 seq27242 104 2e-17 seq22597 104 2e-17 seq15218 104 2e-17 seq7707 104 2e-17 seq275 104 2e-17 seq8338 98.7 7e-16 seq35 98.7 7e-16 seq222 96.9 2e-15 seq27207 95.1 8e-15 seq3560 95.1 8e-15 seq741 95.1 8e-15 seq27210 89.7 3e-13 seq7269 86.0 4e-12 seq6985 86.0 4e-12 >seq7240 Length=45712 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || ||||| |||| ||||| ||||| ||| || || || || ||||| ||||| Sbjct 7303 ACCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 7244 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| | || || | || ||||| ||||| || | | || || || | ||| Sbjct 7243 CAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGG 7184 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||||||| |||||| ||| ||||||| | || || | || || Sbjct 7183 AATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 7124 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | || || |||||||| |||||||||||||| || |||||||| Sbjct 7123 TTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | ||||| || || ||| || || || || ||||| |||||| Sbjct 6230 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 6171 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | || ||||||||||| || | | || || || | ||| Sbjct 6170 AAGGTTCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGA 6111 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| |||||| ||| ||||||| | || || | || ||| Sbjct 6110 ATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 6051 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||||||| ||||| || |||||||| Sbjct 6050 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6004 >seq27242 Length=2599403 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 1766918 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 1766977 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1766978 GCCGGTATTTAGCCTTA 1766994 >seq22597 Length=1249212 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||||| |||| |||||| ||| || || || || ||||| |||||| Sbjct 1182831 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1182772 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | || || || ||||| || || | || || || | ||| Sbjct 1182771 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGG 1182712 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| ||||| || ||||||| | |||||| | || ||| Sbjct 1182711 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACT 1182652 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || ||||||| ||| ||||| || |||||||| Sbjct 1182651 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 >seq15218 Length=2171497 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 595678 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGACTATCGGTCTCGT 595619 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 595618 GCTGGTATTTAGCCTTA 595602 >seq7707 Length=58772 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| Sbjct 1414 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGT 1473 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1474 GCAAGTATTTAGCCTTA 1490 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||| Sbjct 1732 CTCTCTCTTCAAAGTTCTTTTCAAC-TTCCCTTATGGTACTTGTTGACTATCGGTCTCAT 1674 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1673 GCAGGTATTTAGCCTTA 1657 >seq275 Length=1124622 Score = 104 bits (114), Expect = 2e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| Sbjct 107129 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCGGTCTCGCGC 107070 Query 20009 TAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 107069 CAGTATTTAGCCTTA 107055 >seq8338 Length=69949 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||| Sbjct 69375 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACTGTACTTGTTGACTATCAGTCTCGT 69316 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 69315 GCCAGTATTTAGCCTTA 69299 >seq35 Length=2665210 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| Sbjct 215844 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATTGGTCTCGT 215785 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 215784 GCCGGTATTTAGCCTTA 215768 >seq222 Length=3347927 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||| || |||||||||||| || || || |||||| | Sbjct 500541 AAGCCCATTCCCTTGGCTGTGGCTTTGCTAGATAGTAGGTAAGGACATAGGGAATCTCCT 500482 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGATAT 25994 | | || ||||||| ||||||||||||||||| || || Sbjct 500481 TCAGCCATTCATGCACGTCACTAATTAGATGAGGAGAT 500444 >seq27207 Length=2107134 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||| |||||| Sbjct 1126452 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATTGGTCTCTT 1126393 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1126392 GCCAGTATTTAGCCTTA 1126376 >seq3560 Length=1857 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||||||||||| |||||||||||| |||||||||| | | Sbjct 993 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTTGTGC 934 Query 20009 TAATATTTAGCCTTA 20023 |||||||||||| Sbjct 933 AGGTATTTAGCCTTA 919 >seq741 Length=56161 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 || ||||||||||||||||||||||||||| | |||||||||||| ||||||||||| Sbjct 25574 CTTTCTCTTCAAAGTTCTTTTCAACTTTCCGTTACGGTACTTGTTGACTATCGGTCTCCT 25515 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 25514 GCCGATATTTAGCCTTA 25498 >seq27210 Length=2500431 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||| |||||||||||||||||||||||||||| | |||||||||| |||| |||||| Sbjct 1988187 CTCGCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATTGGTCTCCT 1988246 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1988247 GCTGGTATTTAGCCTTA 1988263 >seq7269 Length=187214 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||| |||||| | | |||||||| |||||||||||| Sbjct 105395 CTCTCTCTTCAAAGTTCTTTTCAAC-TTCCCTTAAGTTACTTGTTGACTATCGGTCTCGT 105453 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 105454 GCAGGTATTTAGCCTTA 105470 >seq6985 Length=3969302 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||| ||| || |||||||| |||| |||||| Sbjct 2588773 CTCTCTCTTCAAAGTTCTTTTCAACTTTTCCTTACAATACTTGTTGACTATTGGTCTCAT 2588714 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 2588713 GCCAGTATTTAGCCTTA 2588697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334800348052394