Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq22597 127 2e-24 seq7240 122 8e-23 seq22615 84.2 2e-11 >seq22597 Length=1249212 Score = 127 bits (140), Expect = 2e-24 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | ||||||||| | | Sbjct 1182605 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAAGTGGAGCCCAGT 1182664 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||| | || |||| |||| || ||||||||||| || || |||||| Sbjct 1182665 GATACTATTGAG--AATGTCAAAGCCAAAATCCAA-GACAAAGAAGGCATCCCTCCTGAC 1182721 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||| ||||| ||||| || | ||||||| ||| || || || ||| Sbjct 1182722 CAGCAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTAC 1182781 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||||||||| || ||| | || || | || ||||| || Sbjct 1182782 AACATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGG 1182831 Score = 118 bits (130), Expect = 9e-22 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | ||||||||| | | Sbjct 1181552 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1181611 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| ||| | || |||| |||| || |||||||| || || || |||||| Sbjct 1181612 GATACTATTGAG--AATGTCAAAGCCAAAATCCAA-GACAAAGAGGGCATCCCTCCTGAC 1181668 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| ||||| || | ||||||| ||| || || || ||| Sbjct 1181669 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTAC 1181728 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||||||||| || ||| | || || | || ||||| || Sbjct 1181729 AACATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGG 1181778 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||| || || |||| || || ||||||| | || |||||| | Sbjct 1181321 ACAATGCAGATCTTTGTGAAAACCCTGACAGGGAAGACCATCACCCTGGAGGTGGAGCCC 1181380 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| ||||| ||| | || |||||| |||||||| || || || |||||| Sbjct 1181381 AGTGATACTATTGAGAATGTCAAAACCAAAATCCAAGACAAAGAGGGCATCCCTCCTGAC 1181440 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| ||||| || | ||||| | ||| || || || ||| Sbjct 1181441 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCTGACTAC 1181500 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||||||||| || ||| | || || | || ||||| || Sbjct 1181501 AACATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCGTCTCAGAGGTGG 1181550 >seq7240 Length=45712 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||| ||||| ||||| || || ||||||| | ||||||||| | Sbjct 6001 ACAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCC 6060 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||| || ||| | ||| | |||| ||| ||||| ||||| ||||| || || Sbjct 6061 AGTGACACCATTGAGAATGTCAAGGCCAAAATTCAG-GACAAGGAAGGCATTCCCCCAGA 6119 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || |||||||| || || | ||||||| || || || || || Sbjct 6120 CCAGCAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGAACCTTGTCTGACTA 6179 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||||||||| || || || || || | || ||||| || Sbjct 6180 CAACATCCAGAAAGAATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 6230 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || |||||||||||| ||||||| | ||||||||| | | Sbjct 7076 ATGCAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 7135 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | || || |||| ||| ||||||||||| ||||| || ||||| Sbjct 7136 GACACCATTGAGAATGTCAAGGCCAAAATTCA-AGACAAAGAAGGCATTCCCCCAGACCA 7194 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||| || || || | ||||||| || || || || ||||| Sbjct 7195 GCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 7254 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || || || || || Sbjct 7255 CATCCAGAAAGAATCCACCCTTCACTTGGTCCT 7287 >seq22615 Length=203576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || |||||||| || || || ||||| ||| | | ||||||||||| || || | ||| Sbjct 192735 GATAAAGAAGGCATCCCCCCAGACCAGCAGAGATTGATTTTTGCCGGAAAGCAGCTGGAA 192794 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| |||||| || || ||||| || || |||||||| || || || ||||| || Sbjct 192795 GATGGTCGCACCCTGTCTGACTACAACATCCAGAAAGAATCAACTCTTCACTTAGTCCTT 192854 Query 25212 AGGCTAAGAGGAGG 25225 | || ||||| || Sbjct 192855 CGTCTCAGAGGTGG 192868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433138014650810