Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6963 96.9 4e-15 seq571 93.3 5e-14 >seq6963 Length=4024090 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 93463 AGAAAATCTCTCT-ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 |||||||| |||| || | ||||||||||||||| ||||| |||||||||||||||| Sbjct 2880212 AGAAAATCACTCTTACCAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCA 2880271 Query 93522 ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTT 93581 | || || || |||| ||||||||| ||| || || | ||||| | ||||||| Sbjct 2880272 AGATGTGAGAGATGAAATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTT 2880331 Query 93582 TTGAAAGATCGAC 93594 |||| | ||| || Sbjct 2880332 TTGATAAATCAAC 2880344 >seq571 Length=175726 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || ||||| || || | | ||||||||||||||||| ||||| || |||||| |||| Sbjct 169035 AAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 168976 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || ||||| || |||||||| || |||| |||||| Sbjct 168975 GAAAAGAAGATTCCTTCAACAGCTGCAAAAGCTACAACACGTTC 168932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | ||| ||||||||||||||| | || ||||| ||||||||| Sbjct 166147 ATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGG 166088 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | ||||| || ||||| |||||||| Sbjct 166087 AAGCCATAGAAACAACGGGCTTCAGTTATCTGTACTTCTTG 166047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556610393619760