Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7240 143 2e-29 seq22597 113 4e-20 seq6982 105 6e-18 seq22615 104 2e-17 seq7502 87.8 2e-12 seq7009 82.4 6e-11 >seq7240 Length=45712 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| ||||| || ||||||||||| |||| ||||||||||| ||| Sbjct 7075 GATGCAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAGCCCAG 7134 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| |||||||||||||| || || ||||| || || || Sbjct 7135 TGACACCATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCA 7194 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || || ||| | || ||| || ||| | || || ||||| Sbjct 7195 GCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 7254 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || |||||||||||| | || || || |||| ||| | |||||| Sbjct 7255 CATCCAGAAAGAATCCACCCTTCACTTGGTCCTGCGCTTGAGGGGAGGT 7303 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || |||| ||||||||||| ||| Sbjct 6004 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAGT 6063 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| |||||||| |||||||| || ||||| || || || Sbjct 6064 GACACCATTGAGAATGTCAAGGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 6123 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||| | || ||| || ||| | || || |||||| Sbjct 6124 CAGAGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGAACCTTGTCTGACTACAAC 6183 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || |||||||||||| | || || || Sbjct 6184 ATCCAGAAAGAATCCACCCTGCACTTGGT 6212 >seq22597 Length=1249212 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || |||||||| ||| Sbjct 1181552 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1181611 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||| |||||||| ||||| || || || || || Sbjct 1181612 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181671 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| || ||| | || || |||||| Sbjct 1181672 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1181731 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || |||||||||||| | ||| | || |||| Sbjct 1181732 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCG 1181766 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || |||||||| ||| Sbjct 1182605 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAAGTGGAGCCCAGT 1182664 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||| |||||||| || || || || || || || Sbjct 1182665 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCTGACCAG 1182724 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| ||||| ||| | || ||| || ||| | || || |||||| Sbjct 1182725 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 1182784 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || |||||||||||| | ||| | || |||| Sbjct 1182785 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCG 1182819 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| || || ||||| ||| Sbjct 1181324 ATGCAGATCTTTGTGAAAACCCTGACAGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 1181383 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||| |||||||| ||||| || || || || || Sbjct 1181384 GATACTATTGAGAATGTCAAAACCAAAATCCAAGACAAAGAGGGCATCCCTCCTGACCAG 1181443 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || || || ||| | || || |||||| Sbjct 1181444 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCTGACTACAAC 1181503 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || |||||||||||| | ||| | || |||| Sbjct 1181504 ATCCAGAAAGAATCCACCCTTCATCTGGTCCTGCG 1181538 >seq6982 Length=3457922 Score = 105 bits (116), Expect = 6e-18 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281 || || ||||| ||||| || ||||||||||| |||| |||||||||||| ||| ||| Sbjct 878224 CAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAACCCAGTGAT 878165 Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341 ||| | || || |||| ||||||||||| || || || ||||| | || || || Sbjct 878164 ACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAAGAAGGCATTCCCCTAGACCAGCA- 878106 Query 22342 CGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATT 22401 | | || ||| || || ||| | || ||| | ||| | || || |||||||| Sbjct 878105 -GAGATTGATGTGCTGGAAACCAGCTGGAAGATGGGTGTACCCTGTCTGACTACAACATC 878047 Query 22402 CAAAAAGAATCCACC 22416 || |||||||||||| Sbjct 878046 CAGAAAGAATCCACC 878032 >seq22615 Length=203576 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || || || |||||||| |||| ||||||||||| ||| Sbjct 192869 GATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTGGAGCCCAG 192928 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || || || || || || || || || ||||| Sbjct 192929 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCA 192988 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || || ||| | || ||| || ||| | || || ||||| Sbjct 192989 GCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 193048 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGT 22427 ||| || || ||||||||| | || || || Sbjct 193049 CATCCAGAAGGAATCCACCCTGCACTTGGT 193078 >seq7502 Length=209603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/216 (69%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281 || || ||||| |||| ||| || |||||||| |||||||||||| || ||| || Sbjct 174781 CAGATCTTTGTGAAAATTTTGACTGGTAAAACCATCACTCTTGAAGCAGAGCCCAGTGAC 174840 Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341 ||| | || || |||| ||||| |||||||| || || ||||| || ||| | || Sbjct 174841 ACCCTTGAGAATGTCAAGACCAAAATGCAAGACAAAGAAGGCATTCCTCCAGATGAGCAG 174900 Query 22342 CGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATT 22401 | | || ||||| | || ||||| || || ||||| | || |||||||| Sbjct 174901 AG-ATAATCTTTGCTAGAAAGCAGTTGGAACATGGTGGCACC----CTGACTACAACATC 174955 Query 22402 CAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 || |||||| ||||| | | || ||| || | ||| Sbjct 174956 CAGAAAGAACCCACCCTGTACTTGGTTCTGGGTTTG 174991 >seq7009 Length=1967158 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| || || |||||||||||||| || ||||| || |||||| |||| ||| ||| Sbjct 282907 GGTATCCCGCCAGATCAACAACGTCTGATTTTTGCTGGAAAACAGCTAGAAGATGGCCGG 282966 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| || |||||||| ||||||| Sbjct 282967 ACTCTCTCGGACTACAACATCCAAAAAG 282994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419543977341310