Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq22398 95.1 2e-14 seq22584 93.3 9e-14 seq30408 91.5 3e-13 seq27286 91.5 3e-13 seq22453 91.5 3e-13 seq7005 91.5 3e-13 seq23448 89.7 1e-12 seq30315 86.0 1e-11 seq22470 86.0 1e-11 seq15176 86.0 1e-11 seq30469 84.2 4e-11 >seq22398 Length=850795 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 150660 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 150719 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 150720 TCCCGGCAGAGA 150731 >seq22584 Length=4137260 Score = 93.3 bits (102), Expect = 9e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 142498 GAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 || || |||||| |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 4082693 GACATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGT 4082634 Query 142558 TCGAGCCCCACATCGGGCAGAAG 142580 ||||||||||| | |||| |||| Sbjct 4082633 TCGAGCCCCACGTTGGGC-GAAG 4082612 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 3996868 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 3996927 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 3996928 AGCCCCACGTTGGGC 3996942 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3947787 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3947846 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3947847 CCCACGTTGGGC 3947858 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3994576 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3994517 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3994516 CCCACGTTGGGC 3994505 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4018583 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4018524 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4018523 CCCACGTTGGGC 4018512 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4020496 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4020555 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4020556 CCCACGTTGGGC 4020567 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 3995325 CCCGGGTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 3995384 Query 142565 CCACATCGGGC 142575 |||| | |||| Sbjct 3995385 CCACGTTGGGC 3995395 >seq30408 Length=4411316 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1353289 AGCCCGGATAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1353230 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1353229 CCCCACGTTGGGC 1353217 >seq27286 Length=2435980 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||| Sbjct 733594 ATAGCCCGGCTAGCTCAGTCGATAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 733535 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 733534 AGCCCCACGTTGGGC 733520 >seq22453 Length=1245572 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1148722 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1148781 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1148782 CCCCACGTTGGGC 1148794 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1159102 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1159043 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1159042 CCCACGTTGGGC 1159031 >seq7005 Length=375368 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 51862 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 51921 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 51922 CCCCACGTTGGGC 51934 >seq23448 Length=68838 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 ||| ||| ||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 7642 GGTAAGA-AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTG 7584 Query 142555 GGTTCGAGCCCCACATCGGGC 142575 |||||| ||||||| | |||| Sbjct 7583 GGTTCGTGCCCCACGTTGGGC 7563 >seq30315 Length=1572901 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 498326 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 498385 Query 142564 CCCAC 142568 ||||| Sbjct 498386 CCCAC 498390 >seq22470 Length=653710 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| ||||||||| |||||||| ||||||||||||| |||||||||||| Sbjct 452242 ATAGCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCA 452301 Query 142561 AGCCCCACATCGGGC 142575 ||||||||| |||| Sbjct 452302 TGCCCCACATTGGGC 452316 >seq15176 Length=2126927 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 437003 GCCCGGATAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 436944 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 436943 CCCACGTTGGGC 436932 >seq30469 Length=4560673 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| |||||||||||||||||| ||||||||||||| ||| ||||||||| ||| Sbjct 2084659 CCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTTGTGGGTTCGCGCC 2084718 Query 142565 CCACATCGGGC 142575 |||||| |||| Sbjct 2084719 CCACATTGGGC 2084729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027363052674134