Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7240 170 4e-37 seq22615 152 9e-32 seq6982 127 4e-24 seq22597 109 1e-18 seq7502 93.3 8e-14 seq33301 87.8 3e-12 >seq7240 Length=45712 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || ||||| ||||| |||||||| || || || Sbjct 7302 CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 7243 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | |||||| || || || || | ||| || ||||| || ||| Sbjct 7242 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 7183 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||||||||| || |||||||| ||| |||||||| | || ||| Sbjct 7182 ATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 7123 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| || || | ||| || || || |||||||| Sbjct 7122 TCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 167 bits (184), Expect = 4e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| ||||| |||||||| || || || | || | ||||||||| Sbjct 6212 ACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCTTCC 6153 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || | ||| || ||||| || ||||||||||||||||| ||| Sbjct 6152 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGA 6093 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || |||||||| ||| |||||||| | || ||||| | ||||||||| || Sbjct 6092 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTG 6033 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | |||||| || || ||||||||| Sbjct 6032 CCAGTCAAGGTCTTCACAAAGATCTGCATT 6003 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || || || |||||||| || || || || || | |||||||| Sbjct 6440 ACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 6381 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || | ||| || || || || || |||||||| || || || Sbjct 6380 AGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGG 6321 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| ||| |||||||| | |||||||| | ||||||||| || Sbjct 6320 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTG 6261 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| ||||| |||||||| Sbjct 6260 CCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || || |||||||| || || || |||||||||||||| || ||||| || Sbjct 6578 TGGTCTGGGGGGATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTTTCAATGGTATCA 6519 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| | ||||||||| || || || | |||||| ||||| |||||||| Sbjct 6518 CTGGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAAATCTGCAT 6460 >seq22615 Length=203576 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || |||||||| || || || || || | ||||||||| Sbjct 193078 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCC 193019 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || | ||| || || || || || |||||||| || || || Sbjct 193018 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGG 192959 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| ||| |||||||| | || ||||| | |||||||||||| Sbjct 192958 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTA 192899 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| || || |||||||| Sbjct 192898 CCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Score = 118 bits (130), Expect = 2e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || || || ||||| |||||||| || || || || || | |||||||| Sbjct 192850 ACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 192791 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || || | ||| || ||||| || || |||||||| || || || Sbjct 192790 AGCTGCTTTCCGGCAAAAATCAATCTCTGCTGGTCTGGGGGGATGCCTTCTTTATCCTGG 192731 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGAT 68425 |||||||||||||| || ||||| || | ||||||||| | |||||| Sbjct 192730 ATCTTTGCCTTGACATTTTCAATGGTATCACTGGGTTCTACTTCAAGGGTGAT 192678 >seq6982 Length=3457922 Score = 127 bits (140), Expect = 4e-24 Identities = 147/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || ||||| ||||| |||||||| || || || || || | ||||||||| | ||| || Sbjct 878030 AGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTTT 878089 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || | || | ||| || ||||| | ||||||||||| || |||||||| || ||| Sbjct 878090 CCAGC--ACATCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGCC 878147 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||| ||||| || | ||| ||||| | |||||||||||| || || | | Sbjct 878148 TTGACATTCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAAG 878207 Query 68442 GTCTTGACGAATATCTG 68458 || || || || ||||| Sbjct 878208 GTTTTCACAAAGATCTG 878224 >seq22597 Length=1249212 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| || || || ||||| || || ||||| || || ||||| || ||| Sbjct 1181934 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181875 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || || ||||| ||| || ||||| | || || |||| ||||||| Sbjct 1181874 TCTTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 1181815 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| || || |||||||| Sbjct 1181814 GTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7502 Length=209603 Score = 93.3 bits (102), Expect = 8e-14 Identities = 145/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||||| || |||| ||||| |||||||| || || || || | |||| ||| Sbjct 174981 ACCAAGTACAGGGTGGGTTCTTTCTGGATGTTGTAGTC----AGGGTGCCACCATGTTCC 174926 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| | || || || | ||| || | || || ||||||||||| |||||||| Sbjct 174925 AACTGCTTTCTAGCAAAGATTA-TCTCTGCTCATCTGGAGGAATGCCTTCTTTGTCTTGC 174867 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || | |||||| ||| | |||||| | ||| |||| | ||||||||||| Sbjct 174866 ATTTTGGTCTTGACATTCTCAAGGGTGTCACTGGGCTCTGCTTCAAGAGTGATGGTTTTA 174807 Query 68433 CCCGTGAGGGTCTTGACGAATATCTG 68458 || || | | || || || ||||| Sbjct 174806 CCAGTCAAAATTTTCACAAAGATCTG 174781 Score = 84.2 bits (92), Expect = 4e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||| || ||||| || || ||||| || | || || | || |||||| Sbjct 174305 AAGACAAAGTGCAGGGTGGATTCGTTCTGGATTTTGTTGTCAGACAAGGTTTGTCCATCT 174246 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 || | ||| || | || || || | | | || || ||||| |||||||||||| Sbjct 174245 TCCAGCTGGTTTTCAGCAAAGATCAAGTTCTTCTGATCTCAGGGAATACCTTCCTTGTCT 174186 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGT 68428 ||||| |||||||||| || |||| || | ||| ||| |||| ||||||||||| Sbjct 174185 TGAATTTTTGCCTTGAAATTGTCAATGGCGT-TACTGGGTTCGACTTTAAAGGTGATGGT 174127 Query 68429 TTTTCCCGTGAGGGTCTTGACGA 68451 || || || | |||||| |||| Sbjct 174126 CTTGCCAGTCAAGGTCTTCACGA 174104 >seq33301 Length=39358 Score = 87.8 bits (96), Expect = 3e-12 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| |||||||| ||||| || || | || || || || | | ||||||||| Sbjct 1143 CCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCAGGGCAATGCCTTCT 1202 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||||||| ||| | || |||||||| | | || | ||| ||| Sbjct 1203 TTGTCCTGAATCTTTGCCCTGATGTTCTTAATGGTGTCACCGGGCTCCATTTCAGGTGTG 1262 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| | || || || | |||||| | || |||||||| Sbjct 1263 ATGCTCTTACCAGTCAAGGTCTTCA-TAAAATCTGCAT 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921207969447280