Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq7240 107 2e-18 seq22597 98.7 8e-16 seq22615 86.0 5e-12 seq6982 82.4 6e-11 >seq7240 Length=45712 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || ||||| |||||| || || || ||| Sbjct 7272 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCA 7213 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||||||||| ||| || || Sbjct 7212 GCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGAATTTTGGCCTTG 7153 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | ||||| ||||||| ||| Sbjct 7152 ACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTT 7093 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 7092 TTCACAAAGATCTGCAT 7076 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || |||||||| || || || ||| |||||| || || || ||| Sbjct 6428 GTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCA 6369 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | ||| || || || || ||||||||||| || |||||| || Sbjct 6368 GCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGGATCTTTGCCTTG 6309 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || |||||||||| || Sbjct 6308 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 6249 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 6248 TTCACGAAAATCTGCAT 6232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || || || |||||| || || || || Sbjct 6200 GTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCTTCCAGCTGCTTTCCG 6141 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || ||||||||||| ||||| ||| || || Sbjct 6140 GCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATTTTGGCCTTG 6081 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| |||| || Sbjct 6080 ACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAAGGTC 6021 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 6020 TTCACAAAGATCTGCAT 6004 >seq22597 Length=1249212 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || |||||| |||||| || || || || Sbjct 1182801 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTGCCT 1182742 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| |||||||||||||| || || ||| Sbjct 1182741 GCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTG 1182682 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || ||| || || || | ||| | || ||||| ||||| || Sbjct 1182681 ACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGGTCTTGCCCGTCAGGGTC 1182622 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1182621 TTCACAAAGATCTGCAT 1182605 >seq22615 Length=203576 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || || ||||| |||||| || || || ||| Sbjct 193066 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCA 193007 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || || ||||||||||| || |||||| || Sbjct 193006 GCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGGATCTTTGCCTTG 192947 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | ||||| || |||| || Sbjct 192946 ACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTACCAGTCAAGGTC 192887 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 192886 TTCACAAAGATCTGCAT 192870 >seq6982 Length=3457922 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || |||| |||||| || || || ||| Sbjct 878033 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTTTCCA 878092 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | ||| ||||| | |||||||||||||| || ||| || || Sbjct 878093 GC--ACATCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGCCTTG 878150 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| ||| || || | ||| | ||||| ||||||| ||| Sbjct 878151 ACATTCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTT 878210 Query 114366 TTTACAAAAATCTG 114379 || ||||| ||||| Sbjct 878211 TTCACAAAGATCTG 878224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419950199162088