Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq17168 89.7 4e-13 seq22597 86.0 5e-12 >seq17168 Length=4014 Score = 89.7 bits (98), Expect = 4e-13 Identities = 77/91 (85%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAG--ATCTA 114384 ||||||||||| |||||||||||||||| |||||||||||| | ||| ||| | | | Sbjct 1451 TGTCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGGGAGCAAGTGACCAA 1510 Query 114385 AGGAACCAAAACTGATATATTGAGCCATTCG 114415 |||||||| ||||||| || ||||||||||| Sbjct 1511 AGGAACCATAACTGATTTAATGAGCCATTCG 1541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 77/91 (85%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAG--ATCTA 115581 ||||||||||| |||||||||||||||| |||||||||||| | ||| ||| | | | Sbjct 1451 TGTCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGGGAGCAAGTGACCAA 1510 Query 115582 AGGAACCAAAACTGATATATTGAGCCATTCG 115612 |||||||| ||||||| || ||||||||||| Sbjct 1511 AGGAACCATAACTGATTTAATGAGCCATTCG 1541 >seq22597 Length=1249212 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || ||||| ||||||||||| ||| || ||||| |||||||| || | Sbjct 1181551 ACCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 1181492 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| |||| |||||||| ||||| || || | |||||| || || Sbjct 1181491 CAGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 1181432 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTC 34076 | || ||||||||| | ||||| || || | || | | ||||| | | || Sbjct 1181431 GATGCCCTCTTTGTC--TTGGATTTTGGTT-TTGACATTCTCAATAGTATCACTGGGCTC 1181375 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | || || || || || || || |||||||||||||| |||||| Sbjct 1181374 CACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || ||||| ||||||||||| ||| || ||||| |||||||| || | Sbjct 1181779 ACCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 1181720 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| |||||||| ||||| || || | |||||| || || Sbjct 1181719 CAGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 1181660 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC---ACACTATCAGTAGATTC 34076 | || |||||||| | | |||| |||| || | || | | ||||| | | || Sbjct 1181659 GATGCCCTCTTTGT-CTTGGATTTTGGCTT--TGACATTCTCAATAGTATCACTGGGCTC 1181603 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || || || || || || || ||||||||||| ||||| Sbjct 1181602 CACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396888314691148