Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq22597 152 5e-32 seq7240 125 7e-24 >seq22597 Length=1249212 Score = 152 bits (168), Expect = 5e-32 Identities = 163/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || |||||||| || |||||||| || | | ||| || | ||| Sbjct 1182816 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 1182757 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| ||||| || |||||||| ||| Sbjct 1182756 TCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 1182697 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| ||| | ||||||| || |||||||||| || | ||| Sbjct 1182696 TGGA-TTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGGT 1182638 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 1182637 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 147 bits (162), Expect = 2e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || |||||||| || |||||||| || | | ||| || | ||| Sbjct 1181763 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCT 1181704 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||| ||||| || || ||||| ||| Sbjct 1181703 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCT 1181644 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| ||| | ||||||| || |||||||| | || | ||| Sbjct 1181643 TGGA-TTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGGT 1181585 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 1181584 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 145 bits (160), Expect = 8e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || |||||||| || |||||||| || | | ||| || ||||| Sbjct 1181535 AGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCT 1181476 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||||| ||||||||| ||||| || || ||||| ||| Sbjct 1181475 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCT 1181416 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| || ||| ||| | ||||||| || ||||| || | || | |||| Sbjct 1181415 TGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 1181356 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || |||| ||||| || || || |||||| Sbjct 1181355 TTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 64287 CGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTT 64346 ||||||| ||||||||||| ||| | ||||||| ||||||||| ||||| || || |||| Sbjct 1181936 CGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTT 1181877 Query 64347 TTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 | ||||| | |||| ||||| ||| ||| | || |||| || ||||| || | || Sbjct 1181876 TGTCTTGGA-TTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 1181818 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||| ||||| |||| || || || || || ||||| Sbjct 1181817 ATGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq7240 Length=45712 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | |||||| | ||||| |||||||| || Sbjct 6428 GTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCA 6369 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | | |||||| || || || || |||||||| || || || ||| ||| Sbjct 6368 GCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGGATCTTTGCCTTG 6309 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || ||||| | || | ||||||||||||||| || Sbjct 6308 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTCAAGGTC 6249 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 6248 TTCACGAAAATCTGCAT 6232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499420122224560