Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq22597 89.7 5e-13 seq7240 89.7 5e-13 >seq22597 Length=1249212 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||||| || | ||| | | | || || || || ||||||||||| | Sbjct 1181550 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181491 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || || || || || | | |||| || | ||| ||||| ||||| Sbjct 1181490 AGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181431 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| |||||| ||| | | || | || || | | ||||||| Sbjct 1181430 ATGCCCTCTTTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACC 1181371 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || ||||| ||||| ||||| |||||||| Sbjct 1181370 TCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 |||||| |||| | ||||| || | ||| | | | || || || || ||||||||||| Sbjct 1182835 GCAGCCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTC 1182776 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 || ||||| || || || || || || | | |||| || | ||| ||||| || Sbjct 1182775 AGACAGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGG 1182716 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 ||| || ||||||||||| |||||| ||| | | || | || || | | ||| Sbjct 1182715 AGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTC 1182656 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || | || | || || || ||||| || || ||||| |||||||| Sbjct 1182655 CACTTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 >seq7240 Length=45712 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || || || | | | || || || || ||||||||||| | Sbjct 7302 CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 7243 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || || || || || | | |||| | | ||| ||||| || || Sbjct 7242 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 7183 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | || | | || | |||||| | | |||||| Sbjct 7182 ATGCCTTCTTTGTC-TTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 7124 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| |||| ||||| ||||| |||||||| Sbjct 7123 TTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496039243205280