Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7240 98.7 7e-16 seq6982 89.7 4e-13 >seq7240 Length=45712 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || ||||| || |||||||| || || | | | | ||||| Sbjct 7284 ACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCC 7225 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | ||||| | ||| ||||| ||||| ||||| ||||| | Sbjct 7224 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGA 7165 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || ||| | || || || || || || || || | ||| ||||||||| Sbjct 7164 ATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTA 7105 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||||| ||||| || ||||| Sbjct 7104 CCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCTT 15025 || || || ||||| || ||||| || |||||||| || || || ||| | | |||| Sbjct 6212 ACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA--GACAAGGTTCGCCCATCTT 6155 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | || || || || | ||||| | ||| ||||| ||||| ||||||||||| Sbjct 6154 CCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCT 6095 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| || ||| | || || || || || || || || | ||| ||||| | Sbjct 6094 GAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCT 6035 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || |||| || || ||||| || ||||| Sbjct 6034 TGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6004 >seq6982 Length=3457922 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 14976 AAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTT 15035 |||||| || ||||| || |||||||| || || | | | | ||||| | || || Sbjct 878029 AAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTT 878088 Query 15036 GCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCT 15095 ||||| | ||||| | ||| ||||| ||||| ||||| || || ||||||| Sbjct 878089 TCCAGC--ACATCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGC 878146 Query 15096 TTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAG 15155 || ||| | || || ||||| || ||| || || | ||| ||||||||||| |||| Sbjct 878147 CTTGACATTCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAA 878206 Query 15156 AGTTTTTACAAAAATTTG 15173 ||||| ||||| || || Sbjct 878207 GGTTTTCACAAAGATCTG 878224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357235307508590