Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq7240 95.1 1e-14
>seq7240
Length=45712
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| |||| || ||||| || | ||||||| |||||||| || ||||||||||||||
Sbjct 7231 ATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTT 7172
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
||||||||||| |||| || | |||||| | ||| ||||| || || |
Sbjct 7171 GTCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGAT 7112
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| ||||| | ||||| ||||| || ||||||
Sbjct 7111 GGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCATC 7075
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
||||| || |||||||| ||||| || || || | ||| | ||| |||| ||
Sbjct 6434 TGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGC 6375
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | || |||| ||||| || || || |||||||||||||| || || |||
Sbjct 6374 TTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGGATCTTT 6315
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|||| || | |||||| | ||| ||||| || || | || ||||||||
Sbjct 6314 GCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTGCCGGTC 6255
Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341
| || || || ||||| ||||||
Sbjct 6254 AAGGTCTTCACGAAAATCTGCATC 6231
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
||||| || ||||| || ||||| || || || | |||| ||| |||| ||
Sbjct 6206 TGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCTTCCAGCTGC 6147
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| || | ||||||| |||||||| || ||||||||||| || || ||||||||
Sbjct 6146 TTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATTTTG 6087
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|||| || | |||||| | ||| ||||| || || | || ||||| ||
Sbjct 6086 GCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTC 6027
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
| || || ||||| || |||||
Sbjct 6026 AAGGTCTTCACAAAGATCTGCAT 6004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451799945461040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |