Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq22347 154 2e-32 >seq22347 Length=2972275 Score = 154 bits (170), Expect = 2e-32 Identities = 217/302 (72%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||||||||| ||||| || || || ||||| || | Sbjct 2055395 AACACTGAATGCAGTGAAGGGACATCCCTTTACATTATTGCAGATTAGTGACTGGATTGA 2055454 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | || || |||||||| || || || || ||||| || ||||| || | Sbjct 2055455 GGCTGTATTGATAATTTCAAAACCTACATCGCCACCAAAAGTGCTAGGCTTCCAATAGTC 2055514 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 ||||| ||||| ||| ||||||| ||||| | || || || || || || || | Sbjct 2055515 AGGGGAACAGATTGGGTTACCCATGAGTCCTTTGAGTGAGAAGGGTGCTCCAAGTTCTAC 2055574 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGA 9113 ||| |||| || ||||||||||| ||||| |||||||| || | |||| ||| || | Sbjct 2055575 CATGGTCTCTCCAAAGATGGCACCTGGACGAGGTTTTTCTACTA-GAAGAGCAGGATACA 2055633 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 || | ||| || | || |||||||||||||||| || ||||| || || ||||| | Sbjct 2055634 ACTCCATAGCATCAATATCACCATAGAGGGCTTCCAGTTCTGCAGCCATTTCTTTCTCTC 2055693 Query 9174 CT 9175 || Sbjct 2055694 CT 2055695 Score = 129 bits (142), Expect = 8e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 |||| || ||||| ||||| ||| ||||||| || ||||| ||||| || | || || | Sbjct 2057460 TGGTCTGGAACAATTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACA 2057519 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 | | ||| || |||| |||||||| || ||||||||||||||||| || || | |||| Sbjct 2057520 CTCGGTTATGCTCTCGAAGCCATATTGTAGCGTACATCATTAAACCTGGAACCAGGCCAA 2057579 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 | ||||| | || || ||||| ||||| || || || | || | ||| | ||| | Sbjct 2057580 ATACTTCTTGACCAACAGCAAATTTCAGATGCTCAGGAACATGAGGTGGATAGATCATTT 2057639 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 |||| || ||||| || || ||||| | ||| || ||||| |||| Sbjct 2057640 CTGCCTGAGTATCTTTCACTAAAGGTGGATATACTTCTCCATCAATTACCT 2057690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723402557611600