Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq22597 120 3e-22 seq22615 107 2e-18 seq7240 104 3e-17 >seq22597 Length=1249212 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| |||||||| | || || || ||||| |||||||| || Sbjct 1181550 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181491 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || ||||||||||| || || || | | ||||||||| | || Sbjct 1181490 AGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181431 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| ||||| ||| || | |||| || | | || || || | ||||| Sbjct 1181430 ATGCCCTCTTTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCACC 1181371 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| || || ||||| ||||| |||||||| |||||| || Sbjct 1181370 TCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATTGTG 1181320 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| |||||||| | || || || ||||| |||||||| || Sbjct 1181778 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181719 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||||||||| || || || | | ||||||||| | || Sbjct 1181718 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181659 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| ||||| ||| || |||| || | | || || || | ||||| Sbjct 1181658 ATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACT 1181599 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||||||||| || || |||||||| ||||| Sbjct 1181598 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| ||||| | ||||| |||||||| | || || || ||||| |||||||| || Sbjct 1182832 GCCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 1182773 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || || | || || ||||||||||| || || || | | ||||||||| | || Sbjct 1182772 CAGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGG 1182713 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || ||||| ||| || |||| || | | || || || | ||||| Sbjct 1182712 GATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCAC 1182653 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||||||||| || || |||||||| ||||| Sbjct 1182652 TTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496 |||| || ||||||||||| || || || | | ||||||||| | || | || ||| | Sbjct 1181936 CGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTT 1181877 Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||| || |||| || | | ||||| || | ||||| |||| |||| Sbjct 1181876 TGTCTTGGATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGA 1181817 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||| ||||| || || |||||||| ||||| Sbjct 1181816 TGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1181780 >seq22615 Length=203576 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | |||| |||| || ||||| ||||| |||||||| || Sbjct 193096 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 193037 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || ||| | || || |||||||| || || || ||||| | |||||| || | || Sbjct 193036 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 192977 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| |||||| ||||| || | | ||||| || | ||||| Sbjct 192976 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 192917 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| || |||| || || |||||||| ||||| Sbjct 192916 TCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 >seq7240 Length=45712 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || |||| |||| || | || || || ||||| |||||||| || Sbjct 7302 CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 7243 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || ||| | || || |||||||| || || || ||||| | ||||||||| | || Sbjct 7242 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 7183 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || ||||| || || ||||| || | | ||||| || | ||||| Sbjct 7182 ATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 7123 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| || |||| ||||| |||||||| ||||| Sbjct 7122 TCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564984226422480