Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq22518 136 2e-26 seq22463 132 2e-25 seq229 116 1e-20 seq42 102 3e-16 seq227 100 1e-15 seq171 93.3 2e-13 >seq22518 Length=3477175 Score = 136 bits (150), Expect = 2e-26 Identities = 456/698 (65%), Gaps = 19/698 (3%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||||||||||| ||||| | ||| | ||| || || | |||| |||| || Sbjct 1975544 GCAGTTGGCATTGATCTTGGCACCACTTATTCCTTTGTGGGAGTCTTCCAATATGGGAAA 1975603 Query 450974 GTAGAAATTATAGCAAATGACCAAGGAT-CACGAACTACTCCTTCATGGGTAAGTT---- 451028 || | || || || ||||| |||||| || |||| || || || | || ||| Sbjct 1975604 GTGAAGATCATTGCTAATGATCAAGGAAACAGGAAC-ACCCC--CA--GCTATGTTGCCT 1975658 Query 451029 TTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAATCAATGGTAAATTCAAATGCCA 451088 | | || ||||| || | | || | ||||| ||| ||| || || |||| | Sbjct 1975659 TCATTGACACAGAATGATTAATTGGTGATGCTGCAAAA--AATC--AAGTTGTAATGA-A 1975713 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 |||||| | | |||||| |||||| | ||||| | | | ||||||||| ||||| Sbjct 1975714 CCAACACAATTTTTGATGCCAAACGTCTGATTGGTCAAAGATTTGATGATGAAGTTGTAC 1975773 Query 451149 AAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTC 451208 | ||| | || | ||| | || || ||| | | ||| | ||| | | | Sbjct 1975774 AGTCAGACATGAAGCATTGGCCTTTTACAGTGGTGAATAACACAGGCAGGCCTAAGGTCC 1975833 Query 451209 AAGTAAATTATAAAGGTGAAACTAAAACTTTTGC-TCCTGAAGAAATTTCATCTATGGTT 451267 |||| | || |||| || || |||| ||| |||| ||||| | || || ||||| Sbjct 1975834 AAGTGGAATACAAAGAGGATACCAAAAAGTTTCTATCCTAAAGAAGTATCTTCCATGGTC 1975893 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | || ||||||||||||| | ||| || || | | || || |||| || Sbjct 1975894 TTAACCAAAATGAAAGAAATTGGTGAAACTTACCTTTGGAAAACTGTCACAAATGCTGTG 1975953 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || | | || |||||||||||| | |||| || || || |||||||| ||| Sbjct 1975954 GTCACAGGATCAGCCTATTTCAATGATTCCCAACATCAGGCCACAAAAGATGCTGGAACC 1976013 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||||||| | ||||| || | ||| || ||||| || || || |||| | | || ||| Sbjct 1976014 ATTGCTGGTCTCAATGTGCTCCAAATCATCAATGAGCCAACTGCTGCTGGTATTGCTTAT 1976073 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || || ||| || ||| | | | |||| |||| | || | || | |||| | Sbjct 1976074 GG-CTTGGACAA--AAAGGTTAGTGCCGAAAGAAATGTGTTGATCTTCAACCTTGGAAGT 1976130 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 | ||| |||| || | ||| | ||||||||||| | || ||| | ||| | || Sbjct 1976131 AGTACTTTTGATGTTTGCATCCTTACCATTGAAGATGGCATTTTGGAAATCAAGTCCACA 1976190 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| ||||| ||| | || | || || |||| || Sbjct 1976191 GCTGGAGATACCCATTTGGGTAGAGAGGACTTTGACAA 1976228 >seq22463 Length=748140 Score = 132 bits (146), Expect = 2e-25 Identities = 278/414 (67%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || ||||| | ||||||| || ||||| |||| || | || ||||||||| Sbjct 309248 GGTAAGCCTAAAGTTCAAGTGTCCTACAAAGGGGAAAACAAGGCCTTCTATCCTGAAGAG 309189 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||||| | || |||||||| || || || || || | ||| | | Sbjct 309188 ATCTCCTCCATGGTGTTGACCAAAATGAAGGAGACTGCTGAGGCCTACTTGGGTCATGCG 309129 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || ||||||| || ||||| || || ||||||||||| | ||||| || || || Sbjct 309128 GTCACCAATGCAGTCATCACTGTCCCGGCCTATTTCAATGACTCTCAACGCCAGGCCACC 309069 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| ||| || ||||| | || || || | || || |||||||| |||||| Sbjct 309068 AAGGATGCTGGAGTGATCGCTGGCCTGAACGTGCTGAGGATCATCAATGAACCGACAGCA 309009 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||||| | || |||||||||| ||| | | | | ||| | | || | | | Sbjct 309008 GCTGCCATTGCCTATGGACTAGATAAAGCTAGTCA---GGGAGAGAGACATGTGCTGATC 308952 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||| | ||||| || ||| |||| || | ||| | ||||| || ||| | ||| Sbjct 308951 TTTGATCTGGGTGGGGGCACTTTTGATGTCTCCATCCTTACCATTGATGACGGGATTTTT 308892 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || || || | || || || || || || || || || || |||||||| Sbjct 308891 GAGGTGAAATCCACTGCAGGAGACACCCACCTGGGTGGGGAGGACTTTGATAAT 308838 >seq229 Length=2348100 Score = 116 bits (128), Expect = 1e-20 Identities = 198/285 (69%), Gaps = 14/285 (5%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| | || ||||| || ||||||||||||||| | ||| | || || | ||||||| Sbjct 1180037 ATGCCATTATCACTGTGCCTGCTTATTTCAATGATTCTCAATGACAGGCCATCAAAGATG 1179978 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || | |||| ||||||| | |||| | || ||||| |||||||| ||||| Sbjct 1179977 CTGGGCAACTATCTGGCCTAAATGTACCTCGAGTGATAAATGAGCCTACAGCTGCTGCCT 1179918 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT-ATTTTAGTATTTGAT 451498 | || ||||| | ||| || | ||||| |||||| | | |||||| | Sbjct 1179917 TGGCTTATGG---------TTTAAATAAATCTGAAGACAAAAATCAATGTAGTATACAAC 1179867 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTAT-TTGAAGT 451557 || ||||| ||||||| ||||| |||| | || |||| || | ||||| || ||| Sbjct 1179866 TTAGGTGGTGGAACTCTTGATATTTCTATCCTGGAAATTCAAAA---GGTATGTTTAAGG 1179810 Query 451558 AAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 || | || ||||| |||||| ||||| || |||| |||| Sbjct 1179809 GAAATCCACTAATGGGGATACTTTCCTAGGCAGTAAAGACTTTGA 1179765 >seq42 Length=4688437 Score = 102 bits (112), Expect = 3e-16 Identities = 455/701 (65%), Gaps = 26/701 (4%) Strand=Plus/Minus Query 450915 CAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATG 450974 || |||| ||||| ||||| ||||| | ||| ||||| || || | |||| |||| || | Sbjct 897555 CAGTTGGCATTGACCTTGGCACCACTTATTCCTGTGTGGGAGTCTTCCAACATGGGAAAG 897496 Query 450975 TAGAAATTATAGCAAATGACCAAGGATCACGA-ACTACTCCTTCATGGGTAAGTT----T 451029 | || || || || |||||||||||| || | || || || || | || ||| | Sbjct 897495 TGGAGATCATTGCTAATGACCAAGGAA-ACAAGACCACCCC--CA--GCTACGTTGCCTT 897441 Query 451030 TACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCC 451087 || | ||||| || | || | || || || ||||| ||| || || Sbjct 897440 TATCAACACAGAACGATGAATTGGTGAGGCAGCAAAGAATCAAGCTGTAATG--AACCCC 897383 Query 451088 AAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTAT-GATGATGATACTGT 451146 || | || || | |||||| |||||| | ||||| | | |||| ||||||| ||| Sbjct 897382 AACAGCA--GTTTTTGATGCCAAACGTCTGATTGGTCAAA-GTATTGATGATGCAGTTGT 897326 Query 451147 ACAAAAAGAGAAAAAATTCTTTTCTTATGATG-TAGTAAATCAAAAAGGAAAGCCCTATA 451205 ||| ||| | ||| ||| | | | ||| | || ||| | ||| | | | | Sbjct 897325 ACAGTCAGACATAAAGC-CTTGGCCTTTTATGGTGGTGAATAACGCAGGCAGGTCTAAGG 897267 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 | ||||| | || ||||| || || |||| ||| |||||||||| | || ||||||| Sbjct 897266 TCCAAGTGGAATACAAAGGGGAGACCAAAAGTTTCTATCCTGAAGAAGTATCCTCTATGG 897207 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | | || ||||||||||||| || | || |||| | ||||| ||| | Sbjct 897206 TCTTAACCAAAATGAAAGAAATTGCTGGCACTTACCTTGGAAAGACTGTTACAAGTGCTG 897147 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGA-TGCAGGA 451384 | | || | || | |||||||| || | ||||| || | || ||||| || | Sbjct 897146 TGGTCACAATACCAGACTATTTCAACAATTCCCAACGTCAGACCACAAAAGAGATTAGTA 897087 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | || |||||| | ||||| || | | || ||||| || | | |||||| | || Sbjct 897086 C-CATCGCTGGTCTCAATGTGCTCTAACTCATCAATGAGCCAATTGATGCTGCTATTGCT 897028 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 ||||| | ||| || ||| | | |||| |||| | || | ||||| |||| Sbjct 897027 TATGGTAT-GGACAA--AAAGGTTGGTGCCGAAAGAAATGTGTTGCTCTTTGA-CTTGGA 896972 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 | || || |||| ||| | ||| | ||||||||||| | |||||||| ||| | Sbjct 896971 AGTGGTGCTTTTGATGTTTCCATCCTTACCATTGAAGATGGTATTTTTGAAGTCAAGTCT 896912 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| ||||| || | || || || || ||||||| Sbjct 896911 ACAGCTGGGGATACCCACTTGGGTGGCGAGGACTTTGATAA 896871 >seq227 Length=684390 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| |||| ||||| || |||||||||||||| || || |||||||| Sbjct 483854 GTTACTCATGCAGTTGTTACCGTTCCTGCCTATTTCAATGATGCCCAGCGTCAAGCAACC 483795 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| || |||||||||| | ||||| | | || || |||||||| Sbjct 483794 AAAGATGCTGGTACTATTGCTGGTCTTAATGTCATGAGGATAATCAATGAACC 483742 >seq171 Length=1430361 Score = 93.3 bits (102), Expect = 2e-13 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 391093 TTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAG 391152 |||| |||| || ||||| | |||||| | | ||| || || |||||||||| || Sbjct 181734 TTGAGGTTGGATTTTCTGAAAGTATTGAAAATGTCAAAGCTAAGATACAAGATAAGGGAG 181675 Query 391153 GAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAA 391212 | ||| ||||||||||||| | | ||||| |||| || |||| |||||| ||| || Sbjct 181674 GTATTACTCCTGATCAACAGAGAATTATTTTTGCAGGCAAGCAACAGGAAGAT-GAATAA 181616 Query 391213 CTTTGGCGGATTATAATATTGATAAGGA 391240 |||| | |||||||||||| | || || Sbjct 181615 TTTTGTCTGATTATAATATTAAGAAAGA 181588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974807758049192