Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq22463 284 9e-71 seq22518 161 7e-34 seq80 125 5e-23 seq15244 113 3e-19 seq22416 102 6e-16 seq227 96.9 3e-14 >seq22463 Length=748140 Score = 284 bits (314), Expect = 9e-71 Identities = 951/1464 (65%), Gaps = 26/1464 (2%) Strand=Plus/Plus Query 517210 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 517269 || |||||| || || || || |||| |||| ||| ||||| || || ||||| Sbjct 308025 ATCATTAGTGATGGTGATCTTGTTGGCTTTGCCTGTGCTCTTATCCATAGCGGTGACATT 308084 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 ||||| ||||||||||| | |||||| || || ||||| || ||||| || | |||| Sbjct 308085 CAGAATTCCATTGGCATCAATATCAAAGGTTACCTCAATCTGGGGGACACCACGGGGAGC 308144 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 ||| || || || || | ||| ||||| || || || || || | || Sbjct 308145 AGGAGGAATGCCACTCAGGTCAAAACGGCCCAGCAGGTTGTTGTCCTTGGTCATGGCCCG 308204 Query 517390 TTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATA 517448 ||| ||||| | | ||||| ||| || | | || || || ||||| || ||||| | Sbjct 308205 TTCTCCCTCATATACCTGGATCAGT-ACACCCGGCTGGTTGTCAGAATAGGTGGTAAAGA 308263 Query 517449 CTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 517507 ||||| | | ||| || || || | ||| | | || | ||||| | ||| Sbjct 308264 -TCTGGGTCTGTTTGGTGGGGATGGTGGAGTTGCGTTTGATCAGTGCTGTCATCACACCT 308322 Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567 |||||||| || | || || ||||| |||| ||||| | || | | | || | | Sbjct 308323 CCTGCTGTCTCCAGCCCCAGGGAAAGGGGAGCCACATCCAACAGCAACAGGTCCTGCACT 308382 Query 517568 TTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGC 517626 || || | | || | ||| | ||||| ||||| || | || || ||||| || ||||| Sbjct 308383 TTCTC-TGATTTATCACCCATCAGAATGGCTGCCTGCACTGCTGCTCCATAGGCTACAGC 308441 Query 517627 TTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTG 517686 |||||||| || | | | | || || | | | |||||||| |||| ||||||| Sbjct 308442 CTCATCAGGGTTGATACTCTTGTTCAGGTCTCTGCCATTGAAGAAATCCTGCAGAAGTT- 308500 Query 517687 TCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATT 517745 ||| ||| || || || || | || || || || | || | || | | | | || Sbjct 308501 TCTGTACTTTGGGGATTCGGGTGGAGCCACCCACAAGGACGACGTCGTTAATTTTGGCTT 308560 Query 517746 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG---ACCCGCTCTAAACA 517802 | |||| || | ||| | |||| || ||||| || || |||| | |||| Sbjct 308561 TGTCCATCTTGGCATCTCGCAGGGCTTTCTCTACGGGCTCCAGGGTACCC---CGGAACA 308617 Query 517803 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTT 517862 || || || || ||||| || | || ||||| | || || | | ||||| |||| Sbjct 308618 GATCCGAGCACAGCTCTTCAAACCTTGCCCTAGTGACAGAAGTATAAAAGTCAATGCCTT 308677 Query 517863 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 517922 | ||||| || |||| ||||| | | ||| || ||||| || | | ||||| | Sbjct 308678 CAAACAAGGAGTCAATTTCAAGATTGGCTTGGGTGCTGGAAGACAGGGTTCTCTTAGCTC 308737 Query 517923 GTTCACATGCTGTCCTTAGTCTTCGTA----AGGCTTTTGCTGATTGATTCAAATCTGTT 517978 |||||| ||||| | ||||||| | | |||| | ||| | || |||| | Sbjct 308738 TTTCACAGGCTGTTCGAAGTCTTCTCACAGCACGCTTGTTCTGGCTAAT----ATCTTTC 308793 Query 517979 TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCA 518038 |||| ||||| |||||| || |||||| | |||| || ||||||||||| || || Sbjct 308794 TTATGTTTTCGCTTGAATTCCTCAACAAAGTGGTTTACTAGTCGATTATCAAAGTCCTCC 308853 Query 518039 CCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGAC 518098 || |||| | || | ||||| || | | | || | |||| || || |||| | Sbjct 308854 CCACCCAGGTGGGTGTCTCCTGCAGTGGATTTCACCTCAAAAATCCCGTCATCAATGGTA 308913 Query 518099 AAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TC-ATTTCTT 518156 | | | |||||| || || ||||||| |||||| || || |||| || | || Sbjct 308914 AGGATGGAGACATCAAAAGTGCCCCCACCCAGATCAAAGATCAGCACATGTCTCTCTCCC 308973 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 || || | |||||| || ||||| |||| ||||| || || |||||||| || || | Sbjct 308974 TGACTAG--CTTTATCTAGTCCATAGGCAATGGCAGCTGCTGTCGGTTCATTGATGATCC 309031 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 ||| || || || ||||| || ||| ||||| || ||||| || | ||| || || | Sbjct 309032 TCAGCACGTTCAGGCCAGCGATCACTCCAGCATCCTTGGTGGCCTGGCGTTGAGAGTCAT 309091 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 | ||||| || || ||||| || || |||| || || | | ||| | || || | Sbjct 309092 TGAAATAGGCCGGGACAGTGATGACTGCATTGGTGACCGCATGACCCAAGTAGGCCTCAG 309151 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGG 518396 | || | |||||||| | || | ||| || || || | ||| || | | |||| Sbjct 309152 CAGTCTCCTTCATTTTGGTCAACACCATGGAGGAGATCTCTTCAGGATAGAAGGCCTTGT 309211 Query 518397 ATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATG 518456 ||| || || || |||| || | || ||| ||| | || || || | || | Sbjct 309212 TTTCCCCTTTGTAGGACACTTGAACTTTAGGCTTACCCCCATCGTTTATCACCTGGAAGG 309271 Query 518457 GCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTT 518516 |||||| ||||| || || || || || ||| | | || || | | || Sbjct 309272 GCCAGTGCTTCATGTCCGACTGGACCACCGAATCTCCAAATTTACGGCCGATCAGCCTTT 309331 Query 518517 TTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAA 518576 | || ||||| | || || ||||| || || | || | ||||||||||||||||| Sbjct 309332 TGGCGTCAAAGACTGTGTTCTGAGGATTCATGGCCACCTGGTTTTTGGCTGCATCTCCAA 309391 Query 518577 TCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCAT 518636 | || ||||| ||||| || | ||||| || || || || || || || |||| Sbjct 309392 TGAGTCTCTCTGTGTCTGTGAAGGCCACATAGCTGGGGGTGGTTCGGTTGCCCTGGTCAT 309451 Query 518637 TCGCAATAATTTCAACTTTACCAT 518660 | || || || || || || |||| Sbjct 309452 TGGCGATGATCTCCACCTTGCCAT 309475 >seq22518 Length=3477175 Score = 161 bits (178), Expect = 7e-34 Identities = 368/547 (67%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| | ||||||||||||| ||||| || ||| | ||| Sbjct 1976087 TTTTTGTCCAAGCCATAAGCAATACCAGCAGCAGTTGGCTCATTGATGATTTGGAGCACA 1976028 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| ||||| || ||| ||||| || ||||| Sbjct 1976027 TTGAGACCAGCAATGGTTCCAGCATCTTTTGTGGCCTGATGTTGGGAATCATTGAAATAG 1975968 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || | | || | || |||| || || ||| | || |||| | ||| | Sbjct 1975967 GCTGATCCTGTGACCACAGCATTTGTGACAGTTTTCCAAAGGTAAGTTTCACCAATTTCT 1975908 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA-ATATTGCTTGGATTCATT 518403 |||||||| |||| | ||| || || | || || || | | | | |||| || | Sbjct 1975907 TTCATTTTGGTTAAGACCATGGAAGATACTTCTTTAGGATAGAAACTTTTTGGTATCCTC 1975848 Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463 || ||| |||| | | || | ||| | ||| |||| ||||| | Sbjct 1975847 TTTGTATTCCACTTGGACCTTAGGCCTGCCTGTGTTATTCACCACTGTAAAAGGCCAATG 1975788 Query 518464 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT-ACCAATTAATCGTTTTGCAT 518522 ||||| ||||| || ||| || |||| ||| ||| | |||||| | ||||| |||| Sbjct 1975787 CTTCATGTCTGACTGTACAACTTCATCATCAAA-TCTTTGACCAATCAGACGTTTGGCAT 1975729 Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 ||||||| || |||||| ||| || |||||| ||| || ||||| ||||| | Sbjct 1975728 CAAAAATTGTGTTGGTTC-----ATTACAACTTGATTTTTTGCAGCATCACCAATTAATC 1975674 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA-TTACCTTGATCATTCGCA 518641 |||||| || | || | |||||| | ||| | ||| | || ||||||||||| ||| Sbjct 1975673 ATTCTGTGTCAATGAAGGCAACATA-GCTGGGGGTGTTCCTGTTTCCTTGATCATTAGCA 1975615 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701 || || | ||||| |||| ||| | || || ||| | | |||| || || | |||| Sbjct 1975614 ATGATCTTCACTTTCCCATATTGGAAGACTCCCACAAAGGAATAAGTGGTGCCAAGATCA 1975555 Query 518702 ATACCAA 518708 || |||| Sbjct 1975554 ATGCCAA 1975548 >seq80 Length=1128347 Score = 125 bits (138), Expect = 5e-23 Identities = 341/514 (66%), Gaps = 6/514 (1%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| ||||| || || ||||| ||||| | |||||||| |||||||| Sbjct 270384 TTATCCACAGCAGAAACATTTAGGATGCCATTTGCATCAATGTCAAATGTTACTTCAATC 270325 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || ||||| | || || ||||| ||| | | ||| | || || || Sbjct 270324 TGAGGAACACCTCTGGGTGCTGGGGGGATTCCTGTGAGCTCAAACTTGCCAAGCAGGTTG 270265 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 ||||| || || | | || ||||| || ||| || ||| || ||| || || Sbjct 270264 TTATCCTTTGTCATTGCTCTCTCACCTTCATAAACCTGAATAAGCACACCAGGCTGGTTG 270205 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATA 517489 || ||||| || ||||| |||| | || ||| | || || || | | || Sbjct 270204 TCAGAATAGGTGGTAAAGG-TCTGTCTGCTTGGTGGGGA-TGGTGGTATTACATTTGATG 270147 Query 517490 ATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACT 517549 | | || |||| || || || ||||| | ||||| ||||||||||| ||||| | Sbjct 270146 AGAACAGTTATAACTCCTCCAGCAGTTTCAATTCCAAGGGAAAGAGGAGTCACATCCAAC 270087 Query 517550 AGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGC 517608 || | | | || | |||||| | | ||| |||| ||| || || |||| ||| Sbjct 270086 AGCAGCAAGTCCTGCACATTTTCAGATTTGTCTCCAGACAA-AATGGCAGCCTGAACAGC 270028 Query 517609 AGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAA 517668 |||||||| |||||||| ||||||||||| | | | || || | || |||||||| Sbjct 270027 TGCACCATAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCCTTGCCATTGAA 269968 Query 517669 AAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 || | | ||||| | ||| | || || || |||| || || || || | || | Sbjct 269967 GAAGTCTTGCAGAAGCT-TCTGGATTTTGGGGATGCGAGTGGAACCACCCACCAGGACGA 269909 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATC 517761 | ||||| | ||||||||||| || || | ||| Sbjct 269908 TGTCATGAATTTGTGATTTATCTAGCTTGGCATC 269875 >seq15244 Length=336998 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | ||| Sbjct 323901 TTTTTGTCCAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGGAGCACA 323842 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||| || |||| |||||||| ||||| || | ||| |||||||| ||||| Sbjct 323841 TTGAGACCAGCGATGGTTCCAGCATCTTTTGTGGCCTGACGTTGGGAATCGTTGAAATAG 323782 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 323781 GCTGGTACTGTGACCACAGCAT 323760 >seq22416 Length=3480846 Score = 102 bits (112), Expect = 6e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || ||||| |||||||||||||| |||||||| ||| | ||||| ||| | Sbjct 984972 TGTACACTTATCTTGACTGAGGGAGATTCAGCCAAAACATTAGCTGTTTCTGGCCTTGGT 985031 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGT 635556 || |||| ||||| | ||||| |||||||| ||| |||||||| | | ||||| Sbjct 985032 GTGGTTGGGAGAGACAAGTATGGCGTTTTCCCCCTTCGAGGAAAAATACTCAATGT 985087 >seq227 Length=684390 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 |||||||| || || |||| ||||||||||||||||| | || |||||||| || ||| Sbjct 483742 GGTTCATTGATTATCCTCATGACATTAAGACCAGCAATAGTACCAGCATCTTTGGTTGCT 483801 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC 518313 || | || | ||| || ||||| |||||||| |||| ||| |||| ||| || Sbjct 483802 TGACGCTGGGCATCATTGAAATAGGCAGGAACGGTAACAACTGCATGAGTAAC 483854 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 |||||||||||| |||| | ||||| ||||||||||| ||||||||||||| |||| Sbjct 481622 AAGAATACCATTCACATCTATTTCAAAGGTGACTTCAATCTGAGGGACCCCTCGAGGAGC 481681 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 ||| || || || ||| | |||||||||||| | |||||| || || Sbjct 481682 AGGAGGAATTCCCGTCAAGTCAAATGTTCCCAGGAGGTGATTATCCTTGGT 481732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779037251621644