Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq7240 138 7e-28 seq22597 120 2e-22 seq22615 109 4e-19 seq118 87.8 1e-12 seq6888 86.0 4e-12 >seq7240 Length=45712 Score = 138 bits (152), Expect = 7e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||||||||| ||| ||||||||| ||||| ||||| || Sbjct 7302 CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 7243 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| ||||| ||||| || | || ||||||||| | || Sbjct 7242 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 7183 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || ||||| ||| || ||||| || || || | |||| || ||| | Sbjct 7182 ATGCCTTCTTTGTCTTGAATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCA 7125 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || || | || ||||||||||||||||| Sbjct 7124 CTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 127 bits (140), Expect = 1e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||||||| ||||| ||||| || | | |||| |||| ||| Sbjct 6212 ACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCTTCC 6153 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || | || ||||||||| | || | || |||||||| | Sbjct 6152 AGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGA 6093 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 6092 ATTTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCT 6035 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||||||||||||||| Sbjct 6034 TGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6004 >seq22597 Length=1249212 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1181760 ACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 1181701 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||| ||||| Sbjct 1181700 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGG 1181641 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1181640 ATTTTGGCTTTGAC--ATTCTCAATAGTATCACTGGGCTCCACTTCCAGGGTGATGGTCT 1181583 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || ||||||||||||||||||||| Sbjct 1181582 TGCCCGTCAGGGTCTTCACAAAGATCTGCATA 1181551 Score = 116 bits (128), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 1182813 ACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 1182754 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || || ||||| Sbjct 1182753 AGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 1182694 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1182693 ATTTTGGCTTTGAC--ATTCTCAATAGTATCACTGGGCTCCACTTCTAGGGTGATGGTCT 1182636 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || ||||||||||||||||||||| Sbjct 1182635 TGCCCGTCAGGGTCTTCACAAAGATCTGCATA 1182604 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| ||||| || ||| | || | || ||| Sbjct 1181532 ACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCTTCC 1181473 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||| ||||| Sbjct 1181472 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCTTGG 1181413 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 1181412 ATTTTGGTTTTGAC--ATTCTCAATAGTATCACTGGGCTCCACCTCCAGGGTGATGGTCT 1181355 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || ||||||||||||||||| Sbjct 1181354 TCCCTGTCAGGGTTTTCACAAAGATCTGCAT 1181324 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||||||| || || ||||| || || | |||||||| | || | ||||| ||| Sbjct 1181934 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTG 1181875 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || || || |||||| || || || | |||| || ||| || || | ||| | Sbjct 1181874 TCTTGGATTTTGGCTTTGAC--ATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGA 1181817 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || || || ||||||||||||||||||||| Sbjct 1181816 TGGTTTTGCCTGTCAGGGTCTTCACAAAGATCTGCATA 1181779 >seq22615 Length=203576 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 193078 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCC 193019 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || | || ||||| ||| | || | || || || || Sbjct 193018 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCTTTATCCTGG 192959 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || || | ||| ||||||| Sbjct 192958 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTT 192901 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | |||||||||||||||||||| Sbjct 192900 TACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 >seq118 Length=1243895 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || || ||||||| ||| ||||||||| ||||| ||||| || Sbjct 315079 CCTCCCCTCAAGCACAGGACTAAGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 315020 Query 34815 AGGCTTCGTTCATCATCCAGCT--GTTTTCCGGCAAATATTAGTCGTTGCTGGTCT-TGC 34871 ||| | | || | ||||| | | ||||| ||||| |||| || ||||| ||| | Sbjct 315019 AGGGTATGCCCACCTTCCAGTTGGGCTTTCCAGCAAAAATTAATCTCTGCTGCTCTGGGG 314960 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | | || || || |||||| ||||| || || || | |||| || || Sbjct 314959 GGGATGCTTTCTTTATCCTGGATCTTCACCTTGAC--ATTCTCAATGGTGTCACTGGGCT 314902 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || || ||||||||||||| ||||| Sbjct 314901 TCACTTCAAGGGTCATGGTCTTACCAGTCAG-GTCTTCACAAAGAAATGCAT 314851 >seq6888 Length=4066119 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || || ||||| | ||| ||||||||| ||| | ||||| || Sbjct 2510358 CCTCCCCTCAAGCACAGGACTAAGTGCAGGGTGGATTCTTTCTGGATGCTGTAGTCAGAC 2510417 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCT-TGCGG 34873 ||| | | || | ||||| || ||||| ||||| |||| || ||| | ||| | || Sbjct 2510418 AGGGTACACCCACCTTCCAGTTGCTTTCCAGCAAAAATTAATCTCTGCCGCTCTGAGGGG 2510477 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCA 34931 | || || || || |||||| ||||| || || || | |||| || || Sbjct 2510478 GATGCCTTCTTTATCCTGGATCTTCACCTTGAC--ATTCTCAATGGTATCACTGGGCTTC 2510535 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | | ||| ||||| || || || | |||||||||||||| ||||| Sbjct 2510536 ACTCCAAGGGTGATGGTCTTACCAGTCAAAGTCTTCACAAAGAAATGCAT 2510585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324491269876272