Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq571 125 8e-24 seq30399 107 2e-18 seq15323 107 2e-18 seq30385 98.7 1e-15 seq6963 98.7 1e-15 >seq571 Length=175726 Score = 125 bits (138), Expect = 8e-24 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| ||||| |||||||| | |||| ||| | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || |||||||||| Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 19103 CAAC 19106 | || Sbjct 168944 CTAC 168941 Score = 109 bits (120), Expect = 6e-19 Identities = 104/132 (79%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCATTTTTTGATATT 18679 ||||||| | |||||||||| | | | ||| | ||| ||||||||| | || |||| Sbjct 172734 CATCCAAGGTAAAAGAATTCCC---AGTTGAACTTGACATCACTCCCATTCTCTGGTATT 172678 Query 18680 CGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAAT 18739 | | ||||| || |||||||| ||||||||||| || ||||| ||| |||||||||| Sbjct 172677 CTCCTACTCTCTTCTCAAAGAAGTTAGTTTTTCCTTCCAATGAGATATTCTCCATAAAAT 172618 Query 18740 CAAATGGATTTT 18751 |||||||||||| Sbjct 172617 CAAATGGATTTT 172606 >seq30399 Length=2248691 Score = 107 bits (118), Expect = 2e-18 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 48894 TTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGAT 48953 || ||||| || || | |||||||| || | ||| |||| ||||||||| | |||| | Sbjct 1678650 TTATAAAGGTCCTCCATCACATCACTGAACACTTTCTTTGCTTCTTTATGCAAATTATAA 1678709 Query 48954 ATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTACTAGAT 49013 | | ||||| || ||||| || ||||||||||| | | || || || || | Sbjct 1678710 ACAATAATTCTGGCTGCTAAAATGGCATAATCTGGGTCTTTGGTGGTCAGGGTTGCAGTT 1678769 Query 49014 ATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATA 49073 |||| |||| || |||||||||| || || || || ||||| |||||| ||| Sbjct 1678770 GTTTCAACTGCCAAGGTATCTAATTCCCCTGTGGTCACCCCACTATATTATCCTTGGATA 1678829 Query 49074 ACTTTCATTGCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttt 49133 | |||||| || | || |||| | | ||||| | |||| ||| | | ||| Sbjct 1678830 AGTTTCATGATGATTTGAACATGATCAACAAATTCCATGTTGAGTCTATAGTAGAGTTTC 1678889 Query 49134 tttATTCTAGATGTAATTTTATCAAACAT 49162 | ||| ||||| ||||| || |||||||| Sbjct 1678890 TGTATCCTAGAAGTAATATTGTCAAACAT 1678918 Score = 93.3 bits (102), Expect = 5e-14 Identities = 236/359 (66%), Gaps = 14/359 (4%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||| |||||| | || ||||| | | || ||||| || || || |||||| | || Sbjct 1676976 TGAACTTCTCCCAACAGGACTCTCTGAGTGTAAATATTGCTGGTGTAAGGTTCTGTGGAC 1677035 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 | |||||| || ||||| ||| | || | ||||| | |||| | || || Sbjct 1677036 TGATTATTCCCTAAAATCTGAA------AGGCAATTGGCATTGGGGCAAACAGCAAACTG 1677089 Query 47448 TTTCTTACTCCATATTTTTGTA-TCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 ||||| | |||| ||||| | | | |||||||| ||| || ||| Sbjct 1677090 TTTCTGATGCCATTATTTTGCAATATTCGTGAGAAT---TTTCCAATTCCACAGTTCTAT 1677146 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 ||| |||| ||| | |||||||||||||||| |||| | | ||||| || | ||| Sbjct 1677147 AGGAGTGACATCCCACATATCATATTGAAGAATTTCTTTGCAAACTGGAGAGCCTTCATA 1677206 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 ||||| ||| || || | ||| || | ||||| || | ||| | ||| | |||| Sbjct 1677207 TGTTTCATATGGGCCATGCTCTTTGGCCAAATCACAGCTGCCCTCCTAGTCACCACAATA 1677266 Query 47627 TATTGTTTCAAATATTTTTATGTTTAG--ATTCCTTGCTTCTGATGATTCAAAAGGATA 47683 || |||||||| || | | | ||||| ||| || |||| | ||||||||||| Sbjct 1677267 AATGGTTTCAAAGATCTGTTTATTTAGCAATTGG--GCCTCTGGAGTGTCAAAAGGATA 1677323 >seq15323 Length=1134477 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| | || || | ||| || |||| Sbjct 906896 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATAT 906837 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| |||||||||||||||||||| |||| |||||||||||| | | || | Sbjct 906836 TCAAAGACTGACTCTGATCAATAAATGCCCCTCGATCAGCTGCCATCTTGAGAACAGTTT 906777 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| || ||||| | ||| || | |||||| || Sbjct 906776 TCTGAGAGATTTCCCATACAGTCTTATACAATTGCTTCAAGTCTTCAGG 906728 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 |||| || | ||||||||||||||| || | |||||| | || || || || ||||| | Sbjct 882221 CACTGAACACTTTTTTTGTTTCTTTGTGCAAATTAGAAACAGCAATCCTGGCTGCTAAAA 882162 Query 48976 TAGCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTA 49035 |||||||||||||||| | || || | || |||| |||| || || | | |||| Sbjct 882161 TAGCATAATCTGGATGTTTGGTGGTCAAGGTTGCAGATGTTTCAGCAGCCAGGGTGTCTA 882102 Query 49036 ATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTAT 49087 | || || || || || | |||| |||||| ||||||||||| | ||| Sbjct 882101 ACTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTTAT 882050 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || || ||||| || |||| ||||| || || || ||||| || || Sbjct 902708 TGAAATTCTCCTGACAGGACTCTCCGAGTATAAATATTGCTGGTGTAAGGTTCAATGGAC 902649 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || ||||| |||||||| || || || ||||| | |||| | || || Sbjct 902648 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAACTG 902589 Query 47448 TTTCTTACTCCATA 47461 ||||| | ||||| Sbjct 902588 TTTCTGATGCCATA 902575 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 48443 AATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTT 48502 ||| ||||||||| ||||||| ||| ||| | | || || || ||||| || || Sbjct 887460 AATGTAACTTCCAGTAGCTCTGATACAACTCACAGCAACTCCAATGCCACCAGCTGACTT 887401 Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 || || || ||||| | || || ||||||||||| ||||| |||||||||||| |||| Sbjct 887400 GGAAATCAGTGCACATTGCTTTAGTGTATCATAAATGCCTTCAATACTATCATCTTTCAT 887341 Query 48563 ATTTAATAGAAAACAACTA 48581 | | | || || |||||| Sbjct 887340 ACTCAGAAGGAAGCAACTA 887322 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||||||||||||||||| || || | |||| ||| | |||||||| ||||||||||| Sbjct 891090 ATATAACTTCTCAAATTCTTCTCCCCAAACATCATCCAGACCAGGACACTCATTAGGACA 891031 Query 48176 CATCAATGACCAATCCT 48192 ||||| |||||||||| Sbjct 891030 CATCAGGGACCAATCCT 891014 >seq30385 Length=536680 Score = 98.7 bits (108), Expect = 1e-15 Identities = 190/277 (69%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 18613 TAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTT 18670 |||||| | || || || |||||||||||| | | || || ||| ||| |||| Sbjct 270310 TAAAAACCTGAATTCACAGTAAAAGAATTCTCAGC--TGGATTTAACATCACTTGTATTT 270367 Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 ||||||| ||||| ||||||||||| | |||||||| || || || ||| || Sbjct 270368 GCTGATATTATCCAACT-TTTTTTCAAAGCAGTTAGTTTTCTGTTCCAAAGAGATATTTT 270426 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 | ||||| | ||||||||||| ||| ||| | || | || |||| ||| ||| | Sbjct 270427 CTATAAAGTAAAATGGATTTTCTACTTTAAGAAGCTTGCTAAAACCTAGTTCCAATGTAA 270486 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 || || |||||||||| ||| || ||||| | | ||||||||| || || | Sbjct 270487 GTTGGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGAAATTCATTCTAATCAACT 270546 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTAT 18887 | ||||| | || || || | || | |||||||| Sbjct 270547 TCACAGGCAAAGCCTCAGTCAACAAGACCTGTTCTAT 270583 >seq6963 Length=4024090 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| |||||||||||||| ||||||||||| || || | || || Sbjct 2880226 ACCAAATTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATGTGAGAGATG 2880285 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 |||| ||| |||||||| | | | | ||||||| | || |||||| |||||||| || Sbjct 2880286 AAATATTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCTTTTGATAAATCAAC 2880344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561856033725360