Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq571 152 6e-32 >seq571 Length=175726 Score = 152 bits (168), Expect = 6e-32 Identities = 111/129 (86%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | |||||||||||| |||||||| ||||||||||||| ||| || Sbjct 169062 TCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 169003 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || |||||||| |||||||| ||| Sbjct 169002 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 168943 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 168942 ACAACACGT 168934 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | || |||||||| |||| |||| || || || || || ||||||| Sbjct 172700 CATCACTCCCATTCTCTGGTATTCTCCTACTC-TCTTCTCAAAGAAGTTAGTTTTTCCTT 172642 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | | ||| ||||| |||||||||||||||||||| Sbjct 172641 CCAATGAGATATTCTCCATAAAATCAAATGGATT 172608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 |||||||| ||||| |||| ||||||||||||||| || || ||||| ||||| || || Sbjct 166147 ATATAAGTGTCAATAAGTAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGG 166088 Query 37506 AAACCATAAAAACACCTAGCTTCAGATA 37533 || ||||| ||||| | ||||||| || Sbjct 166087 AAGCCATAGAAACAACGGGCTTCAGTTA 166060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592050449942960