Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7675 140 3e-28 seq6894 120 2e-22 seq6877 82.4 6e-11 >seq7675 Length=222078 Score = 140 bits (154), Expect = 3e-28 Identities = 332/495 (67%), Gaps = 10/495 (2%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 |||||||| ||| || || || | |||| | ||||| | | | ||| |||||| Sbjct 43556 GGGAAAGG-TCTTGGTTCTTGCTGAAACTGAATTTTCAGTAGCTTAATACGATTCAGGTA 43498 Query 29826 GACGTGAGCGTCTCCCAGGGTG-TGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | |||| |||||||| | || ||||| || || || | ||| || |||| || | Sbjct 43497 TATATGAGTATCTCCCAGAATTATGTACAAATTCACCTGGCTTTAGGCCTTTGACTTGGG 43438 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 |||||||||| ||||| || || || ||||| ||||| || | | || ||| ||| | Sbjct 43437 CCATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACAGCATCCTGAGACCCTCAT 43378 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | || || || || || | || ||| ||||||| || | || | |||| ||| | Sbjct 43377 CTCCAGATCTTTGATATAACTAACAAGAGAGCTTGCCATTTAATACAAAGAACTAACAGA 43318 Query 30005 TGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTT--CCAGGC---G 30057 ||||| ||| ||||||| ||||| |||| | |||| || || | | | Sbjct 43317 GAGTGTGACACAGAGGAAGTGCCATCAGAGGAAGATTCCTTTAGGATTTAGAATTCTAAG 43258 Query 30058 CACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGC 30117 ||||| ||||| | || || || |||||| | |||| ||| | ||||| || Sbjct 43257 CACAC-ATGATCCTTCTTTCATCAGGGTTGGTTTTGATTGTGTCAATTAATTTTTGTAGT 43199 Query 30118 TGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177 ||||| | | || || || |||| |||| || | || |||| || ||||| Sbjct 43198 TGATCTATTCTTTGCCTGGAATAATCTGTGTTCATTTCTTTATATTCTGACCCAAAATGT 43139 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30237 ||| ||||||| || ||||| || |||| ||||| || |||||| ||| ||| | Sbjct 43138 CTCTACTGGAAGCCATACACTGGCCCCAAATCTCCTTCCTCCCTGGTAGTGAATCCCTGC 43079 Query 30238 TTGTCCAAAAAGTCT 30252 ||||||||||||||| Sbjct 43078 TTGTCCAAAAAGTCT 43064 >seq6894 Length=939852 Score = 120 bits (132), Expect = 2e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || |||| ||||| || ||||| ||||||||||| || ||||| ||||||| | Sbjct 56371 TCATTTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAAT 56312 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| || |||||| ||| ||| ||||||||||||||||| || || ||||| | Sbjct 56311 CTCCTTCCTCCCTGGTAGTGAATCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCAT 56252 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||| || || || || | ||||| || || | ||||| || || Sbjct 56251 CCCAGATTTTCACTCCTTTGGCAGAGAGTTCCTTAGCATTTGTAGAACC 56203 >seq6877 Length=2727454 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| ||| ||||| ||| ||| ||||| || ||| || || Sbjct 2213326 TTCAGTTCTCTACTGAGAACTAAGTTAATCCTATCTTTCAAAGGTCGATGCTTCTCAGGA 2213267 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || | |||||||||| || ||||| || ||| Sbjct 2213266 ATGGAGAACCAGGTTTTCTTTCCCATTATCAACAGATTCTGTTTACCT 2213219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408438448508702