Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq7240 149 5e-31
seq22615 125 6e-24
seq22597 122 7e-23
seq6982 116 3e-21
seq7502 91.5 1e-13
>seq7240
Length=45712
Score = 149 bits (164), Expect = 5e-31
Identities = 175/236 (74%), Gaps = 3/236 (1%)
Strand=Plus/Minus
Query 101234 TAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTG 101293
|||||| ||||| || || || | || || |||||||| |||||||| || || |||
Sbjct 7308 TAGACA---CCTCCCCTCAAGCGCAGGACCAAGTGAAGGGTGGATTCTTTCTGGATGTTG 7252
Query 101294 TAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGA 101353
|| || | | || | |||| |||| ||||| || ||||| ||||| | ||| ||
Sbjct 7251 TAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGG 7192
Query 101354 TCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGAC 101413
|| || |||||||||||||| ||||||||||| || ||| | || | ||||||
Sbjct 7191 TCTGGGGGAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTG 7132
Query 101414 GTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| ||||||||||| |||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct 7131 GGCTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || || || ||||| |||||||| || || ||||| || |
Sbjct 6230 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 6171
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| |||| |||| |||| ||||| || ||||| ||||| | ||| || || || |||
Sbjct 6170 AAGGTTCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGA 6111
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||| || || |||||||| || ||| | || | |||||| | ||||||
Sbjct 6110 ATGCCTTCCTTGTCCTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 6051
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
||||| |||| || ||||| || || || || ||||| |||||||| ||
Sbjct 6050 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTGT 6001
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || || || ||||||||||| || || || ||||| || |
Sbjct 6458 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 6399
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| ||||| || ||||| || || | ||| ||||| || ||
Sbjct 6398 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGG 6339
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||||||||| || || ||| || ||| | || | |||||| | || |||
Sbjct 6338 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 6279
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| |||| || |||||||| || || || || || ||||||||
Sbjct 6278 TCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232
>seq22615
Length=203576
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || || || ||||| ||||| || || || ||||| || |
Sbjct 193096 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 193037
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| ||||| || ||||| ||||| | ||| ||||| || ||
Sbjct 193036 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 192977
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||||||||| || || ||| || ||| | || | |||||| | ||||||
Sbjct 192976 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 192917
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| |||| ||||| || || || || || ||||| ||||||||
Sbjct 192916 TCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870
Score = 104 bits (114), Expect = 2e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | ||||| ||||| || |||||||| || || ||||| || |
Sbjct 192868 CCACCTCTGAGACGAAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 192809
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| ||||| || ||||| ||||| | ||| || || || ||
Sbjct 192808 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAAATCAATCTCTGCTGGTCTGGGGGG 192749
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
|||||||||||||| || || ||| || ||| |||| | || ||| | ||| |||
Sbjct 192748 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTTTCAATGGTATCACTGGGTTCTACT 192689
Query 101423 TCAAGAGTGA 101432
||||| ||||
Sbjct 192688 TCAAGGGTGA 192679
>seq22597
Length=1249212
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302
|| ||||| | ||| | || | ||||||||| |||||||| || || ||||| || |
Sbjct 1182831 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1182772
Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362
| || | |||| |||| ||||| |||||||| || | | ||| || || || ||
Sbjct 1182771 AGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGG 1182712
Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422
||||||||||| ||||| ||||| ||| ||| | || | ||| ||| | ||||||
Sbjct 1182711 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCCACT 1182652
Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || |||| || ||||| || | || || ||||| ||||||||
Sbjct 1182651 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1182605
>seq6982
Length=3457922
Score = 116 bits (128), Expect = 3e-21
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 101269 AAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTT 101328
|||||| |||||||| || || ||||| || | | || | |||| |||| || ||
Sbjct 878029 AAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTT 878088
Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388
|| ||| || ||| | ||| || || | ||||||||||||||||||||||||||
Sbjct 878089 TCCAGCACAT--CAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGC 878146
Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448
|| ||| | || | || ||| | |||||||||||| |||| ||||| ||||| ||
Sbjct 878147 CTTGACATTCTCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAA 878206
Query 101449 AGTTTTTACAAATATCTG 101466
||||| ||||| |||||
Sbjct 878207 GGTTTTCACAAAGATCTG 878224
>seq7502
Length=209603
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/218 (70%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 101249 CTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTT 101308
|| |||| | ||| || | ||||| | |||||| || || ||||| || | | |
Sbjct 174993 CTCAAACCCAGAACCAAGTACAGGGTGGGTTCTTTCTGGATGTTGTAGTCAGGG----TG 174938
Query 101309 CTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368
| ||| ||||| ||||| | ||||| || | | ||| | ||| || |||||||||
Sbjct 174937 CCACCATGTTCCAACTGCTTTCTAGCAAAGATTAT-CTCTGCTCATCTGGAGGAATGCCT 174879
Query 101369 TCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGA 101428
||||| ||||| ||||| || ||| | || | |||||| | || ||||||||
Sbjct 174878 TCTTTGTCTTGCATTTTGGTCTTGACATTCTCAAGGGTGTCACTGGGCTCTGCTTCAAGA 174819
Query 101429 GTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTG 101466
|||| ||||| || || ||| |||| ||||| |||||
Sbjct 174818 GTGATGGTTTTACCAGTCAAAATTTTCACAAAGATCTG 174781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396104658422718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |