Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq22597 100 2e-16 >seq22597 Length=1249212 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| |||| ||| || ||| ||||| || || ||||| ||||| Sbjct 1181550 CCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 1181491 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||| || ||||| || || | ||| || || | || Sbjct 1181490 AGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1181431 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| || ||| ||||| ||| | | || || | |||||| Sbjct 1181430 ATGCCCTCTTTGTCTTGGAT-TTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCCAC 1181372 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| || || || || || |||| ||||| ||||| |||||||| ||| Sbjct 1181371 CTCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATTGTG 1181320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380770584337602