Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq22615 84.2 2e-11 seq7240 84.2 2e-11 >seq22615 Length=203576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || || || || ||||||||||| ||| ||| ||| || Sbjct 192870 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 192929 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||| ||| || ||||| || | ||| |||||| Sbjct 192930 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCCCCAGATCAG 192989 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || || || |||||||| || || | || || ||| Sbjct 192990 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 193049 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || ||||| || |||||| |||| Sbjct 193050 ATCCAGAAGGAATCCACCCTGCACTTGGT 193078 >seq7240 Length=45712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| || || ||||||||||| ||| ||| ||| || Sbjct 7076 ATGCAGATCTTTGTGAAAACCTTGACCGGTAAAACCATCACCCTTGAAGTGGAGCCCAGT 7135 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||||| |||||||| || | ||| ||| || Sbjct 7136 GACACCATTGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGCATTCCCCCAGACCAG 7195 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || || || |||||||| || || | || || ||| Sbjct 7196 CAGAGATTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 7255 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || |||||||| || || ||| |||| Sbjct 7256 ATCCAGAAAGAATCCACCCTTCACTTGGT 7284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425218288444146