Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq8280 161 1e-34 >seq8280 Length=78473 Score = 161 bits (178), Expect = 1e-34 Identities = 591/918 (64%), Gaps = 7/918 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| ||||| || || | ||||||||| || || |||||| || || |||| Sbjct 69352 TGTGTCTTAGATGCTCCTCTAAACATTGGACTGCAAAAGAGTCAACATCAGTATCAAATT 69411 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || ||||| | |||||| ||| | || ||||||| | ||||| || || | Sbjct 69412 TGTTGGCGAAGAAATGGTGCT-GTT--GCAGTATCCAGTTTAAATCTCCTACTCCAAATA 69468 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 || || ||||| | || | || || || || || || ||||||| || |||| Sbjct 69469 TACATACAGAACGGACATGAATTCCATTACATGGTGGATATGGAGCTCCCTTGAAAACGT 69528 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| |||| ||||| ||||||||||| || | || ||||||||||| | || | Sbjct 69529 CTCCTTCCAAGTATTGCCATTTCACAAACCTAGCAACTGCATGCATGTCGGAAATATCAT 69588 Query 160285 A-TTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | || ||| | | | | ||||| ||||| | || || | || | || |||||| Sbjct 69589 ACTTATTACTGGAAGAG-AGTGCACCTGGAACTTCAGGAATTCTTTGAATTGTAGCCCAC 69647 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | | ||| || ||||| || || || |||| |||||| || || | ||| || Sbjct 69648 AAATATTCATCTGGGCTATATGTATCTTTAGCCCATTCAATAAATTTCAGGATCTTCCCA 69707 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || || | || || || | || |||||||| || ||||| || || Sbjct 69708 TTAGTTAGGACATACTCTACATACTTCCTACTAACAACAAAGTAGGCACTGCCTGAAAAA 69767 Query 160464 ATCGGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || ||| | ||||| || ||| | || || | || ||||| | | || | Sbjct 69768 ATTGGTGTTTCAATAGGAGGAAGTGAC-TTATCTTTTCCTGTGTTTTTTAGCTTGCCCTC 69826 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | | | ||||||||||||| || || || | ||||| ||| || || Sbjct 69827 AATAACTTCATAATGCTTCTTCCACCTTACTTCTTTATGGGAAGGCATTTTTTCAGTTTC 69886 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 || ||||| || | | || || |||| | | | || || || || || || | Sbjct 69887 TAAGCTGTTTCCATTCACTAAAGACTTTAGCTTCCTTATTATTTCCAGATTGGTTTTAAT 69946 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 || || || | || || | ||||||| || ||||||| | ||| | || || Sbjct 69947 TGGGAAATCCATGCCACAAAGATTTATCAAATATTTCCATTCTGAACTCTGTCTGTAGAG 70006 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 || |||||||| || ||||| || || || | ||||| || || ||||| || ||||| Sbjct 70007 ATCTCTCATGCAGTTGATATCCGCTTGGACCCTACTCCATGATGCATACACAACATTCTC 70066 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 |||| |||||| | |||| |||| |||||| || | || ||| ||| || || Sbjct 70067 CAGTTGACTGGCAATGAAGATATTATTGAAACAAGATGCAATGCCCTTCACTGCTGCTAA 70126 Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | | | ||| ||| || || | |||||| |||||||| | |||||| Sbjct 70127 AAAGGATTCAGGAGATTTTTTGTCAACATGAATGCAATAATAATTCTGAGGTGTGTAGAT 70186 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | ||| || | ||| || || || |||| | ||| || || || || || Sbjct 70187 AGTTCTTAGGAGCCTATCAAGCATTTCAATTTTGTGATAAACCACTATTGAATATGCAAT 70246 Query 160943 CGGAAACTCGGTCTCCTC 160960 ||||| || | ||| || Sbjct 70247 GGGAAATTCTGCCTCTTC 70264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576959638956240