Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq22615 109 1e-18 seq22597 102 2e-16 seq7240 102 2e-16 seq571 96.9 7e-15 seq7502 87.8 4e-12 seq171 87.8 4e-12 seq6982 84.2 4e-11 >seq22615 Length=203576 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || || | || | || || ||| || || ||| Sbjct 193099 ATCCCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 193040 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || ||||||||||| |||||||| ||||| || Sbjct 193039 GACAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGG 192980 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | || | || Sbjct 192979 GGGATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 192920 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||||||||| || || || | ||| |||||||| Sbjct 192919 ACTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 192870 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | ||||| || | ||| | ||||| ||| || || ||| Sbjct 192871 ATCCCACCTCTGAGACGAAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCA 192812 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || ||||| || |||||||| || || || Sbjct 192811 GACAGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAAATCAATCTCTGCTGGTCTGGG 192752 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | ||| | |||| Sbjct 192751 GGGATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTTTCAATGGTATCACTGGGTTCT 192692 Query 192487 ACTTCTAGAGTAAT 192500 ||||| || || || Sbjct 192691 ACTTCAAGGGTGAT 192678 >seq22597 Length=1249212 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | ||||| ||| || || ||| Sbjct 1181553 ATACCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCA 1181494 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| || || || |||||||| | ||||| || ||||| Sbjct 1181493 GACAGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 1181434 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| ||||| |||| ||||| |||| ||| | || Sbjct 1181433 GGGATGCCCTCTTTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCC 1181374 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||| || || || | ||||| | ||| ||||||||| Sbjct 1181373 ACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | ||||| ||| || || ||| Sbjct 1181781 ATACCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCA 1181722 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || ||||| Sbjct 1181721 GACAGGGTACGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 1181662 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| ||||| ||| ||||| |||| ||| | || Sbjct 1181661 GGGATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTGGGCTCC 1181602 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || || || | || || | ||| |||||||| Sbjct 1181601 ACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 1181552 >seq7240 Length=45712 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || || ||||| | || || |||| |||| || || ||||||||| Sbjct 7266 TCTTTCTGGATGTTGTAGTCAGACAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAG 7207 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || |||||||| || || || || || |||||||| ||||| ||||| || ||||| Sbjct 7206 ATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGAATTTTGGCCTTGACATTC 7147 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | || | || ||||| || || ||||||||||| || || ||||| | | Sbjct 7146 TCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACA 7087 Query 192526 AATATCTGCAT 192536 || |||||||| Sbjct 7086 AAGATCTGCAT 7076 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || || | |||| || || ||| || || ||| Sbjct 6461 ATCCCACCTCTGAGACGAAGGACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCA 6402 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || |||||||| ||||||||||| ||||| || Sbjct 6401 GACAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGG 6342 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | || | ||| Sbjct 6341 GGGATGCCTTCTTTATCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 6282 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| || || || || || || | || |||||||| Sbjct 6281 ACTTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq571 Length=175726 Score = 96.9 bits (106), Expect = 7e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || ||| || | ||||||| |||||||||||| |||||||| |||| || | Sbjct 169064 CCTCATCTCTACTAATTAGTTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 169005 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | ||||| ||||| ||||||||| || ||||||||| || || || ||| ||||| | Sbjct 169004 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 168945 Query 49966 CTA 49968 ||| Sbjct 168944 CTA 168942 >seq7502 Length=209603 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Minus Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 ||||| || || | ||||||||||| |||||| | ||| || || || |||||||| ||| Sbjct 174928 TCCAACTGCTTTCTAGCAAAGATTA-TCTCTGCTCATCTGGAGGAATGCCTTCTTTGTCT 174870 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGAC--GATTCTACTTCTAGAGTAATGG 192502 || ||||| | || ||||| | || | | || | ||| |||| ||||| |||| Sbjct 174869 TGCATTTTGGTCTTGACATTC--TCAAGGGTGTCACTGGGCTCTGCTTCAAGAGTGATGG 174812 Query 192503 TTTTACCAGTTAATGTTTTAATAAATATCTG 192533 |||||||||| || |||| | ||| ||||| Sbjct 174811 TTTTACCAGTCAAAATTTTCACAAAGATCTG 174781 >seq171 Length=1430361 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||||||||| || || |||||| ||| ||| || || ||||| || | |||| Sbjct 181597 ATATTATAATCAGACAAAATTA-TTCATCTTCCTGTTGCTTGCCTGCAAAAATAATTCTC 181655 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||||||||||| | || ||| | ||||||||||| ||| ||| ||||| Sbjct 181656 TGTTGATCAGGAGTAATACCTCCCTTATCTTGTATCTTAGCTTTGACATT 181705 >seq6982 Length=3457922 Score = 84.2 bits (92), Expect = 4e-11 Identities = 132/188 (70%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| ||| || || ||||| | || | |||| |||| || || |||||| | Sbjct 878039 TCTTTCTGGATGTTGTAGTCAGACAGGGTACACCCATCTTCCAGCTGGTTTCCAGCACA- 878097 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 | |||||||| || || | || || |||||||||||||| ||||| || ||||| Sbjct 878098 -TCAATCTCTGCTGGTCTAGGGGAATGCCTTCTTTATCTTGAATTTTGGCCTTGACATTC 878156 Query 192466 GTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATA 192525 || | ||| | ||| ||||| || || ||||||||||| || || ||||| | | Sbjct 878157 TCAATGGTATCACTGGGTTCCACTTCAAGGGTGATGGTTTTACCGGTCAAGGTTTTCACA 878216 Query 192526 AATATCTG 192533 || ||||| Sbjct 878217 AAGATCTG 878224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984026236554900