Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq571 93.3 8e-14 seq7240 91.5 3e-13 seq22597 87.8 3e-12 seq171 86.0 1e-11 >seq571 Length=175726 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 39167 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 39226 ||||||| |||||||||||| |||||||| |||| || || ||||| ||||| ||||| Sbjct 169045 TTCATTAGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGC 168986 Query 39227 AAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTA 39270 |||| || ||||||||| || || || ||| ||||| |||| Sbjct 168985 AAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCTA 168942 >seq7240 Length=45712 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || |||||||| || |||||||| ||||| || || || |||||||| Sbjct 7230 TCTTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTG 7171 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| || ||||| || || || | || ||||| || || ||| Sbjct 7170 TCTTGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATG 7111 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || || ||||| | || |||||||| Sbjct 7110 GTTTTACCGGTCAAGGTTTTCACAAAGATCTGCAT 7076 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || |||||||||||||||||||| || || || || || ||||||||| Sbjct 6386 TCTTCCAGCTGCTTTCCAGCAAAAATTAATCTCTGCTGATCTGGGGGGATGCCTTCTTTA 6327 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || ||||| || || || | |||||||| || || ||| Sbjct 6326 TCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATG 6267 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || | ||| |||||||| Sbjct 6266 GTCTTGCCGGTCAAGGTCTTCACGAAAATCTGCAT 6232 >seq22597 Length=1249212 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || | ||| | || | ||||| || || || || Sbjct 1181553 ATACCACCTCTGAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCA 1181494 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| || || || ||||| || | ||||| |||||||| Sbjct 1181493 GACAGGGTACGACCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 1181434 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| ||||| |||| ||||| |||||||| | || Sbjct 1181433 GGGATGCCCTCTTTGTCTTGGATTTTGGTTTTGACATTCTCAATAGTATCACTGGGCTCC 1181374 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || ||||| || || || | ||||| | || ||||||||| Sbjct 1181373 ACCTCCAGGGTGATGGTCTTCCCTGTCAGGGTTTTCACAAAGATCTGCATT 1181323 >seq171 Length=1430361 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| |||||||||||| || ||| || ||| || ||| ||| || || |||||| Sbjct 181588 TCTTTCTTAATATTATAATCAGACAAA-ATTATTCATCTTCCTGTTGCTTGCCTGCAAAA 181646 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 || | ||||||||| ||||| | || ||| | ||||||||||| ||| ||| ||||| Sbjct 181647 ATAATTCTCTGTTGATCAGGAGTAATACCTCCCTTATCTTGTATCTTAGCTTTGACATT 181705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904728982969200