Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq22451 89.7 2e-12 >seq22451 Length=467571 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || ||| || ||||| || ||||| || || |||| |||||||||||||| Sbjct 54195 ACCAGTTTCAGCTGTCTTGACAGCAGTGTCAATAAGCCCTTCACGCCCACCCATAGCATG 54254 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||||| | ||| ||| || || | | ||||| | ||||| || || || Sbjct 54255 AAAGAAGAACTCGGTGGGTGTGAGACCAGCCAAGTAGGAGTTTTCAACAAAGCCTCGGCT 54314 Query 302727 CTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC--TGTTCTCATAGCCG 302781 ||| || || |||| || ||| | ||||| || ||||||| |||| | | |||| Sbjct 54315 CTCAGGACCGTAATCATC---TTTGATGAAGTGGGGAAGGGTCCGATGTT-TGA-AGCCA 54369 Query 302782 TATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 |||| || ||||| || || || ||||||||||||| Sbjct 54370 AATGGAATCCGCTTGCCTTCTACATTCTGCTGTCCCA 54406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471139214431238