Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq22586 170 2e-36 seq25317 152 6e-31 seq22448 152 6e-31 seq23105 141 1e-27 seq23144 107 2e-17 >seq22586 Length=2399975 Score = 170 bits (188), Expect = 2e-36 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 41772 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 41713 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 41712 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 41653 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 41652 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 41593 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||||||||||||||||| Sbjct 41592 GGACCTGCTTGAGCACCTTGTAGA 41569 Score = 161 bits (178), Expect = 1e-33 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 38634 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 38693 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| |||||| |||| | Sbjct 38694 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCGCCCGAGATGCGCTCGAAGA 38753 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 38754 TGTCGTTGACGAAAGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 38813 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||||||||||||||||| Sbjct 38814 GGACCTGCTTGAGCACCTTGTAGA 38837 Score = 152 bits (168), Expect = 6e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 40981 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGA 40922 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| || ||||| || ||||||| |||| | Sbjct 40921 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGAGAAGCCTCACTGGCGATGCGCTCGAAGA 40862 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||| || |||||||| Sbjct 40861 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATACCGGTGTCGGGGT 40802 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 40801 GGACCTGCTTCAGCACCTTGTAGA 40778 >seq25317 Length=5404 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | || Sbjct 224 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCAGTCTGGATCTCCCGGGACGTGA 165 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| | |||||||| ||| |||||| | ||||||| |||| | Sbjct 164 TGGTGGAGCGTTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 105 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || |||||||||| ||| | ||| |||||||||| |||||||| Sbjct 104 TATCGTTGACGAAGGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCCGTGTCGGGGT 45 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 44 GCACCTGCTTCAGCACCTTGTA 23 >seq22448 Length=196367 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | || Sbjct 19327 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGGGACGTGA 19386 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| | |||||||| ||| |||||| | ||||||| |||| | Sbjct 19387 TGGTGGAGCGTTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGA 19446 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || |||||||||| ||| | ||| |||||||||| |||||||| Sbjct 19447 TATCGTTGACGAAAGAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCCGTGTCGGGGT 19506 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 19507 GCACCTGCTTCAGCACCTTGTA 19528 Score = 125 bits (138), Expect = 9e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | |||||||||||| ||||||||||| |||| | ||| | Sbjct 166590 TGGCCAGCTCTCCCGGCAGAAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGG 166531 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||| ||||| | |||||||| ||| ||||| ||||||| || | |||| Sbjct 166530 TGGAGCGTTTGTTATAATGCGCCAGGCGGGACGCCTCTCCAGCGATGCGCTCAAAAATGT 166471 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || || |||||||| | ||| | |||| || |||||| ||| ||||| | Sbjct 166470 CGTTAACGAAAGAGTTCATAATACCCATAGCCTTGGATGAAATGCCCGTGTCCGGGTGGA 166411 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| || |||||||| Sbjct 166410 CCTGCTTCAGGACCTTGTA 166392 >seq23105 Length=22628 Score = 141 bits (156), Expect = 1e-27 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 1254357 CCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTG 1254416 ||| ||| | ||| |||||||| ||||||||||| || | ||| ||| ||| ||| Sbjct 2 CCGGGCAGCAGCAGACGCACGGCAGTCTGGATCTCCCGGGACGTGATGGTGGAGCGTTTG 61 Query 1254417 TTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1254476 || | |||||||| ||| |||||| | ||||||| |||| || |||||||| || Sbjct 62 TTGTAATGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATATCGTTGACGAAG 121 Query 1254477 GAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGC 1254536 |||||||||| ||| | ||| |||||||||| |||||||||||||||||| ||| Sbjct 122 GAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGC 181 Query 1254537 ACCTTGTA 1254544 |||||||| Sbjct 182 ACCTTGTA 189 >seq23144 Length=78198 Score = 107 bits (118), Expect = 2e-17 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | |||||| || || ||||||||||| || | || Sbjct 77086 GCTTGGCCAGCTCCCCAGGCAGCAGCAGGCGTACAGCCGTCTGGATCTCCCGGGACGTGA 77027 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | | ||||| ||| | |||| |||| || || | | Sbjct 77026 TAGTGGAGCGCTTGTTGTAAGGTGCCAGGCGGGATGTCTCGCCAGCGATACGCTCAAAGA 76967 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||| | ||| | |||||||| |||||||| Sbjct 76966 TGTCATTAACGAAGGAGTTCATGATGCCCATGGCTTTGGAGAAGATGCCCGTGTCGGGGT 76907 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| | ||||||||| Sbjct 76906 GCACCTGCTTCAACACCTTGTA 76885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104187005093758