Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq22586 224 2e-52 seq25317 219 7e-51 seq22448 219 7e-51 seq23144 159 5e-33 seq23105 150 3e-30 >seq22586 Length=2399975 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 41811 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 41752 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 41751 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 41692 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 41691 GGGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 41632 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct 41631 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGCACCTTGT 41572 Query 1485710 AAAC 1485713 | || Sbjct 41571 AGAC 41568 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 38595 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 38654 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 38655 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 38714 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| |||||| |||| ||||||||||| || ||||||| Sbjct 38715 GGGCCAGGCGGGACGCCTCGCCCGAGATGCGCTCGAAGATGTCGTTGACGAAAGAGTTCA 38774 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct 38775 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGCACCTTGT 38834 Query 1485710 AAAC 1485713 | || Sbjct 38835 AGAC 38838 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 41020 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 40961 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 40960 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 40901 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||| || ||||||| |||| ||||||||||| || ||||||| Sbjct 40900 GGGCCAGGCGAGAAGCCTCACTGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 40841 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||| || ||||||||| |||||||| |||||||||| Sbjct 40840 TGATGCCCATGGCCTTGGAAGAGATACCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 40781 Query 1485710 AAAC 1485713 | || Sbjct 40780 AGAC 40777 Score = 118 bits (130), Expect = 2e-20 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||| ||||| ||||||| || ||| ||| Sbjct 128 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGTCGTGCTTGGCCAGCTCCCCGGGCA 69 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 68 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGCTTGTTGTAGT 9 Query 1485590 GCGCCAGG 1485597 | |||||| Sbjct 8 GGGCCAGG 1 >seq25317 Length=5404 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 263 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 204 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| |||| ||| ||| ||| ||||| Sbjct 203 GCAGCAGACGCACGGCAGTCTGGATCTCCCGGGACGTGATGGTGGAGCGTTTGTTGTAAT 144 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| || |||||||| || ||||||| Sbjct 143 GCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATATCGTTGACGAAGGAGTTCA 84 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 83 TGATGCCCATGGCTTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 24 Query 1485710 AAAC 1485713 | || Sbjct 23 ACAC 20 >seq22448 Length=196367 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 19288 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 19347 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| |||| ||| ||| ||| ||||| Sbjct 19348 GCAGCAGACGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTGGAGCGTTTGTTGTAAT 19407 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| || |||||||| || ||||||| Sbjct 19408 GCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATATCGTTGACGAAAGAGTTCA 19467 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||||| |||||||||||||||||| |||||||||| Sbjct 19468 TGATGCCCATGGCTTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 19527 Query 1485710 AAAC 1485713 | || Sbjct 19528 ACAC 19531 Score = 178 bits (196), Expect = 2e-38 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| ||||||| || || ||| Sbjct 166632 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGTTTGGCCAGCTCTCCCGGCA 166573 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||| |||||| Sbjct 166572 GAAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGTTTGTTATAAT 166513 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| ||||||| || | |||||||| || || ||||||| Sbjct 166512 GCGCCAGGCGGGACGCCTCTCCAGCGATGCGCTCAAAAATGTCGTTAACGAAAGAGTTCA 166453 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| || |||||| ||| ||||| |||||||| || ||||||| Sbjct 166452 TAATACCCATAGCCTTGGATGAAATGCCCGTGTCCGGGTGGACCTGCTTCAGGACCTTGT 166393 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 166392 ACACATAGATAGAGTA 166377 Score = 120 bits (132), Expect = 5e-21 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| || ||||| || ||||||| || ||| ||| Sbjct 96679 TGTATTTGGTGACAGCCTTGGTGCCCTCAGACACGGCATGTTTGGCCAGCTCCCCGGGCA 96738 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||| ||||| | || || ||| ||||||||| Sbjct 96739 GCAACAGGCGCACAGCCGTCTGAATCTCCCTGGAAGTTATGGTGGAGCGCTTGTTGTAAT 96798 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||| |||||| |||| || || | || ||||||||||| ||||||| Sbjct 96799 GCGCCAAACGGGACGCCTCGCCAGCGATACGCTCAAAAATATCGTTGACAAAAGAGTTCA 96858 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| || ||||| || || || ||||| || | ||| |||| Sbjct 96859 TAATGCCCATAGCTTTAGAAGAAATGCCAGTATCAGGATGAACCTGTTTCAACACTTTGT 96918 Query 1485710 AAAC 1485713 | || Sbjct 96919 ACAC 96922 >seq23144 Length=78198 Score = 159 bits (176), Expect = 5e-33 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||||||||| || || ||||| || || || |||||| ||||||| || || ||| Sbjct 77123 TACTTGGTGACTGCTTTAGTACCTTCAGACACTGCGTGCTTGGCCAGCTCCCCAGGCAGC 77064 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | |||||| || || ||||||||||| |||| ||| ||| ||||||||| | Sbjct 77063 AGCAGGCGTACAGCCGTCTGGATCTCCCGGGACGTGATAGTGGAGCGCTTGTTGTAAGGT 77004 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| | |||| |||| || || | ||||| || || || ||||||||| Sbjct 77003 GCCAGGCGGGATGTCTCGCCAGCGATACGCTCAAAGATGTCATTAACGAAGGAGTTCATG 76944 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | |||| | |||||||| |||||||||||||||||| | ||||||||| Sbjct 76943 ATGCCCATGGCTTTGGAGAAGATGCCCGTGTCGGGGTGCACCTGCTTCAACACCTTGTAC 76884 Query 1485712 ACAAAG 1485717 ||| || Sbjct 76883 ACATAG 76878 >seq23105 Length=22628 Score = 150 bits (166), Expect = 3e-30 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1485523 CCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTG 1485582 ||| ||| | ||| |||||||| ||||||||||| |||| ||| ||| ||| ||| Sbjct 2 CCGGGCAGCAGCAGACGCACGGCAGTCTGGATCTCCCGGGACGTGATGGTGGAGCGTTTG 61 Query 1485583 TTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1485642 || ||||||||||| |||||| | ||||||| |||| || |||||||| || Sbjct 62 TTGTAATGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAGATATCGTTGACGAAG 121 Query 1485643 GAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGC 1485702 ||||||||||| ||| | |||| |||||||||| |||||||||||||||||| ||| Sbjct 122 GAGTTCATGATGCCCATGGCTTTGGAGGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGC 181 Query 1485703 ACCTTGTAAAC 1485713 |||||||| || Sbjct 182 ACCTTGTACAC 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912419681542586